Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY15722 | Canola | cytosol | 90.21 | 88.38 |
| CDX84933 | Canola | cytosol | 77.84 | 76.65 |
| CDY27605 | Canola | cytosol | 78.87 | 76.12 |
| AT1G27300.1 | Thale cress | nucleus | 68.04 | 66.0 |
| VIT_01s0010g03800.t01 | Wine grape | cytosol | 34.54 | 34.18 |
| KRH31520 | Soybean | cytosol | 23.2 | 29.61 |
| KRG97393 | Soybean | nucleus | 27.32 | 28.19 |
| PGSC0003DMT400084737 | Potato | cytosol | 29.9 | 28.02 |
| Solyc05g015640.2.1 | Tomato | cytosol | 28.35 | 27.23 |
| KRH76090 | Soybean | nucleus | 14.95 | 25.22 |
| TraesCS2A01G346700.1 | Wheat | cytosol | 24.74 | 24.74 |
| TraesCS2B01G365000.1 | Wheat | cytosol | 24.23 | 24.48 |
| Zm00001d050563_P001 | Maize | nucleus | 25.26 | 24.26 |
| TraesCS2D01G345400.1 | Wheat | cytosol | 24.23 | 23.98 |
| HORVU2Hr1G084420.1 | Barley | cytosol | 22.68 | 22.92 |
| Zm00001d016570_P001 | Maize | cytosol | 24.23 | 21.86 |
| EES05123 | Sorghum | nucleus | 24.23 | 21.86 |
| Os02t0509600-01 | Rice | plasma membrane | 23.2 | 21.33 |
Protein Annotations
| EnsemblPlants:CDY03907 | EnsemblPlantsGene:GSBRNA2T00117399001 | ncoils:Coil | PANTHER:PTHR35280 | ProteinID:CDY03907 | ProteinID:CDY03907.1 |
| SEG:seg | UniParc:UPI0004EE9472 | MapMan:35.2 | : | : | : |
Description
BnaC07g11320D
Coordinates
chrLK031947:+:751978..753172
Molecular Weight (calculated)
22094.1 Da
IEP (calculated)
4.624
GRAVY (calculated)
-0.666
Length
194 amino acids
Sequence
(BLAST)
(BLAST)
001: MESSEDVEVL SRAIEKLLDE KKNREIAGES FIEDDDDQLL LSRIISQLES PNPFPKAVET TREEAESSLT SKGRAEGERQ LEESIEEIAK DIKEVKRQNK
101: VTHILLSALI ILTLTWQLSE YSMIYMMKER LTHPIRSIGG MFSGMFKGKI RPIKNKLSNA RDEDNHHNGN GTNTGVHIQV PELLRDLGFD DDDE
101: VTHILLSALI ILTLTWQLSE YSMIYMMKER LTHPIRSIGG MFSGMFKGKI RPIKNKLSNA RDEDNHHNGN GTNTGVHIQV PELLRDLGFD DDDE
001: MESSEDVENL SRAIEKLLHE KRKREASGDA FIEDADDQLF LSSLISQLES PNPKGKEDVI TGEEEEKEEE SADSSPSKGK SEGQRQLEES IEEIAKDIKK
101: VKKQNKITHV LLSATIILTL VWQLSEYSMI FMLKDRISHP VRSIGGMLNG MFKGKLRPIK NQLAGTSNSN DQNNHGNGSH TGPQLQVPEL LREFGFDDEE
101: VKKQNKITHV LLSATIILTL VWQLSEYSMI FMLKDRISHP VRSIGGMLNG MFKGKLRPIK NQLAGTSNSN DQNNHGNGSH TGPQLQVPEL LREFGFDDEE
Arabidopsis Description
F17L21.9 [Source:UniProtKB/TrEMBL;Acc:Q9FZK5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.