Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 1
- plasma membrane 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G38250.1 | CDX78905 | AT4G19030.1 | 21798944 |
| AT4G38250.1 | CDX98596 | AT4G19030.1 | 21798944 |
| AT4G38250.1 | CDX99411 | AT4G19030.1 | 21798944 |
| AT4G38250.1 | CDY01565 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra033558.1-P | Field mustard | plasma membrane | 80.0 | 99.44 |
| CDY59097 | Canola | plastid | 97.98 | 98.42 |
| AT4G38250.1 | Thale cress | plasma membrane | 89.89 | 91.74 |
| CDY21456 | Canola | plasma membrane | 73.26 | 80.89 |
| CDY70145 | Canola | plasma membrane | 72.81 | 80.4 |
| VIT_03s0038g03900.t01 | Wine grape | plasma membrane | 67.64 | 70.66 |
| CDY47026 | Canola | peroxisome, plastid | 61.57 | 63.57 |
| CDY42861 | Canola | peroxisome | 61.12 | 63.55 |
| GSMUA_Achr1P02810_001 | Banana | cytosol, plasma membrane, vacuole | 54.83 | 61.93 |
| TraesCS6B01G271500.1 | Wheat | plasma membrane | 57.08 | 60.33 |
| GSMUA_Achr5P11060_001 | Banana | plasma membrane | 53.48 | 60.1 |
| TraesCS6D01G235500.1 | Wheat | plasma membrane | 56.85 | 60.09 |
| TraesCS6A01G254100.1 | Wheat | plasma membrane | 56.85 | 60.09 |
| HORVU6Hr1G064740.1 | Barley | plasma membrane | 56.63 | 59.86 |
| Solyc10g048180.1.1 | Tomato | plasma membrane | 57.3 | 59.72 |
| Os04t0565500-01 | Rice | cytosol, plasma membrane, plastid | 56.85 | 59.53 |
| TraesCS2D01G400900.1 | Wheat | plasma membrane | 56.18 | 59.1 |
| TraesCS2B01G421800.1 | Wheat | plasma membrane | 56.18 | 59.1 |
| TraesCS2A01G403800.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid, vacuole | 55.96 | 58.87 |
| PGSC0003DMT400033422 | Potato | plasma membrane | 57.08 | 58.8 |
| GSMUA_Achr4P25490_001 | Banana | plasma membrane | 51.24 | 58.16 |
| EES07473 | Sorghum | plasma membrane | 55.51 | 57.98 |
| Zm00001d017557_P001 | Maize | plastid | 55.96 | 57.64 |
| OQU82139 | Sorghum | peroxisome | 54.16 | 56.18 |
| GSMUA_AchrUn_... | Banana | plasma membrane, plastid, vacuole | 52.58 | 55.98 |
| Os02t0670900-02 | Rice | endoplasmic reticulum, plasma membrane, plastid | 57.3 | 52.36 |
| EES12671 | Sorghum | plastid | 57.3 | 51.41 |
| Zm00001d026121_P001 | Maize | cytosol, peroxisome, plasma membrane, plastid | 56.63 | 50.91 |
| CDY53922 | Canola | plasma membrane | 35.73 | 37.32 |
| CDX73848 | Canola | plasma membrane | 35.28 | 36.85 |
| CDY08487 | Canola | plasma membrane | 34.16 | 36.45 |
| CDY01068 | Canola | plasma membrane | 33.93 | 36.04 |
| CDX73972 | Canola | extracellular, plastid | 6.97 | 23.66 |
| CDX85233 | Canola | plasma membrane | 21.35 | 23.46 |
| CDX86397 | Canola | plasma membrane | 21.35 | 23.46 |
| CDY44419 | Canola | plasma membrane | 20.9 | 22.96 |
| CDY38090 | Canola | plasma membrane | 21.57 | 22.17 |
| CDX85556 | Canola | plasma membrane | 20.45 | 21.21 |
| CDX91000 | Canola | plasma membrane | 20.22 | 20.93 |
| CDX78269 | Canola | plasma membrane | 23.82 | 20.0 |
| CDY22507 | Canola | plasma membrane | 23.15 | 19.81 |
| CDX73443 | Canola | cytosol, nucleus, plasma membrane | 23.82 | 19.74 |
| CDX79951 | Canola | cytosol, nucleus, plasma membrane | 23.37 | 19.66 |
| CDY23868 | Canola | cytosol, nucleus, plasma membrane | 23.37 | 19.66 |
| CDY18351 | Canola | plastid | 22.47 | 19.65 |
| CDY35425 | Canola | plasma membrane | 22.92 | 19.62 |
| CDY07919 | Canola | cytosol, nucleus, plasma membrane | 23.15 | 19.51 |
| CDY44630 | Canola | plasma membrane | 24.04 | 19.49 |
| CDX93284 | Canola | cytosol, nucleus, plasma membrane | 23.82 | 19.41 |
| CDX74865 | Canola | plasma membrane | 24.04 | 19.38 |
| CDY40336 | Canola | plasma membrane | 23.82 | 19.38 |
| CDY67831 | Canola | cytosol, peroxisome, plasma membrane | 23.15 | 19.32 |
| CDY06942 | Canola | cytosol, peroxisome, plasma membrane | 22.92 | 19.1 |
| CDY10463 | Canola | plasma membrane | 23.37 | 19.05 |
| CDX80808 | Canola | plasma membrane | 10.79 | 18.97 |
| CDY55126 | Canola | plasma membrane | 21.35 | 18.48 |
| CDX73974 | Canola | cytosol, nucleus, plasma membrane | 16.4 | 17.85 |
| CDX85489 | Canola | vacuole | 17.3 | 17.82 |
| CDY55127 | Canola | cytosol, plasma membrane, plastid | 23.37 | 17.81 |
| CDX80809 | Canola | plasma membrane | 23.37 | 17.54 |
| CDY04048 | Canola | plasma membrane | 20.9 | 16.03 |
Protein Annotations
| EnsemblPlants:CDY54797 | EnsemblPlantsGene:GSBRNA2T00014667001 | GO:A0A078IXE6 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:AA_transpt_TM | PANTHER:PTHR22950 | PANTHER:PTHR22950:SF464 | PFAM:PF01490 | ProteinID:CDY54797 | ProteinID:CDY54797.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EDBCEB | UniProt:A0A078IXE6 | MapMan:24.2.3.4.4 | : |
Description
BnaA06g40910DBnaA06g40910D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IXE6]
Coordinates
chrLK033351:+:19817..21154
Molecular Weight (calculated)
48081.7 Da
IEP (calculated)
6.769
GRAVY (calculated)
0.776
Length
445 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFAKEASSS SSSSSSYSLK MPPPREDTPL LLGKSPPLSS QFKTFANVFI AVVGAGVLGL PYAFKRTGWL MGVLLLLSVS VLTHHCMMLL VHTRRKLDSF
101: NGGGGFSKIG SFGDLGFAVC GSLGRLVVDL FIILSQAGFC VGYLIFIGTT LANIFDPDSP TSLSLRHQIT TLGSEFLGVS SKSLYIWGCF PFQLGLNSIK
201: TLTHLAPLSI FADVVDLAAM AVVVVEDSMI ILKQRPDVVA FGGFSLFFYG MGVAVYSFEG VGMVLPLESE MKDKDKFGKV LALGMGFISF IYIAFGFLGY
301: LAFGEDTMDI ITGNLGAGLI STIVQLGLCI NLFFTFPLMM NPVFEIVERR FSGGMYSAWL RWLLVLAVTL VALFVPNFTD FLSLVGSSTC CILGFVLPAL
401: FHLLVFKEEM GWKQWSLDMA IVGLGVVLAV SGTWSSLSEI FSVKV
101: NGGGGFSKIG SFGDLGFAVC GSLGRLVVDL FIILSQAGFC VGYLIFIGTT LANIFDPDSP TSLSLRHQIT TLGSEFLGVS SKSLYIWGCF PFQLGLNSIK
201: TLTHLAPLSI FADVVDLAAM AVVVVEDSMI ILKQRPDVVA FGGFSLFFYG MGVAVYSFEG VGMVLPLESE MKDKDKFGKV LALGMGFISF IYIAFGFLGY
301: LAFGEDTMDI ITGNLGAGLI STIVQLGLCI NLFFTFPLMM NPVFEIVERR FSGGMYSAWL RWLLVLAVTL VALFVPNFTD FLSLVGSSTC CILGFVLPAL
401: FHLLVFKEEM GWKQWSLDMA IVGLGVVLAV SGTWSSLSEI FSVKV
001: MGFQNEASSS SYTLKIPPPA REDSPLLGKG PPLSSQFKTF ANVFIAVVGA GVLGLPYAFK RTGWLMGVLL LVSVSVLTHH CMMLLVYTRR KLDSFNAGIS
101: KIGSFGDLGF AVCGSLGRIV VDLFIILSQA GFCVGYLIFI GTTLANLSDP ESPTSLRHQF TRLGSEFLGV SSKSLYIWGC FPFQLGLNSI KTLTHLAPLS
201: IFADIVDLGA MAVVIVEDSM IILKQRPDVV AFGGMSLFLY GMGVAVYSFE GVGMVLPLES EMKDKDKFGK VLALGMGFIS LIYIAFGILG YLAFGEDTMD
301: IITANLGAGL VSTVVQLGLC INLFFTFPLM MNPVFEIVER RFSRGMYSAW LRWVLVLAVT LVALFVPNFA DFLSLVGSST CCVLGFVLPA LFHLLVFKEE
401: MGWLQWSSDT AIVVLGVVLA VSGTWSSLSE IFSVKV
101: KIGSFGDLGF AVCGSLGRIV VDLFIILSQA GFCVGYLIFI GTTLANLSDP ESPTSLRHQF TRLGSEFLGV SSKSLYIWGC FPFQLGLNSI KTLTHLAPLS
201: IFADIVDLGA MAVVIVEDSM IILKQRPDVV AFGGMSLFLY GMGVAVYSFE GVGMVLPLES EMKDKDKFGK VLALGMGFIS LIYIAFGILG YLAFGEDTMD
301: IITANLGAGL VSTVVQLGLC INLFFTFPLM MNPVFEIVER RFSRGMYSAW LRWVLVLAVT LVALFVPNFA DFLSLVGSST CCVLGFVLPA LFHLLVFKEE
401: MGWLQWSSDT AIVVLGVVLA VSGTWSSLSE IFSVKV
Arabidopsis Description
AVT3CAmino acid transporter AVT3C [Source:UniProtKB/Swiss-Prot;Acc:Q9SVG0]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.