CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G02170.1	Thale cress	plasma membrane	87.74	85.74
CDX80808	Canola	plasma membrane	37.16	75.49
CDY55127	Canola	cytosol, plasma membrane, plastid	80.16	70.55
CDX80809	Canola	plasma membrane	81.13	70.32
CDY07919	Canola	cytosol, nucleus, plasma membrane	67.9	66.1
CDX73972	Canola	extracellular, plastid	16.73	65.65
CDX73974	Canola	cytosol, nucleus, plasma membrane	51.95	65.28
CDY40336	Canola	plasma membrane	66.93	62.89
CDY10463	Canola	plasma membrane	65.76	61.9
HORVU2Hr1G075350.2	Barley	endoplasmic reticulum, plasma membrane, vacuole	17.9	53.49
HORVU4Hr1G022660.1	Barley	extracellular	21.79	50.68
Solyc10g084830.1.1	Tomato	cytosol, peroxisome, plasma membrane	50.0	48.58
PGSC0003DMT400028760	Potato	cytosol, peroxisome, plasma membrane	49.42	48.02
CDY18351	Canola	plastid	45.72	46.17
CDX78269	Canola	plasma membrane	47.08	45.66
CDX73443	Canola	cytosol, nucleus, plasma membrane	46.69	44.69
CDY44630	Canola	plasma membrane	47.67	44.63
CDX74865	Canola	plasma membrane	47.86	44.57
GSMUA_Achr6P34060_001	Banana	plasma membrane	47.67	44.38
CDX93284	Canola	cytosol, nucleus, plasma membrane	46.5	43.77
CDY22507	Canola	plasma membrane	42.02	41.54
CDY35425	Canola	plasma membrane	42.02	41.54
Zm00001d032325_P001	Maize	mitochondrion, plasma membrane, vacuole	21.79	41.48
EES17245	Sorghum	cytosol, peroxisome, plasma membrane	45.72	40.8
CDY06942	Canola	cytosol, peroxisome, plasma membrane	41.63	40.07
CDY67831	Canola	cytosol, peroxisome, plasma membrane	41.25	39.77
CDY23868	Canola	cytosol, nucleus, plasma membrane	40.86	39.7
CDX79951	Canola	cytosol, nucleus, plasma membrane	40.86	39.7
HORVU5Hr1G020560.3	Barley	plasma membrane	44.55	38.68
TraesCS5B01G084900.1	Wheat	plasma membrane	44.55	38.23
TraesCS5D01G091100.1	Wheat	plasma membrane	44.16	38.09
TraesCS5A01G081500.1	Wheat	plasma membrane	43.77	37.69
Os12t0574000-01	Rice	plasma membrane	43.0	37.21
Zm00001d030751_P001	Maize	plasma membrane	45.14	36.71
Zm00001d041534_P002	Maize	plasma membrane	43.39	36.62
CDX91000	Canola	plasma membrane	29.77	35.58
Zm00001d031629_P001	Maize	cytosol, plasma membrane, vacuole	12.45	35.56
CDX85556	Canola	plasma membrane	29.38	35.2
CDY44419	Canola	plasma membrane	27.43	34.81
CDX86397	Canola	plasma membrane	27.24	34.57
CDX85233	Canola	plasma membrane	27.04	34.32
CDY38090	Canola	plasma membrane	27.04	32.1
CDX85489	Canola	vacuole	21.98	26.16
CDY21456	Canola	plasma membrane	19.26	24.57
CDY70145	Canola	plasma membrane	19.07	24.32
CDY04048	Canola	plasma membrane	27.24	24.14
CDY42861	Canola	peroxisome	19.46	23.36
CDY47026	Canola	peroxisome, plastid	19.26	22.97
CDY01068	Canola	plasma membrane	18.29	22.43
CDY08487	Canola	plasma membrane	17.9	22.06
CDX73848	Canola	plasma membrane	18.09	21.83
CDY53922	Canola	plasma membrane	18.09	21.83
CDY59097	Canola	plastid	18.48	21.44
CDY54797	Canola	plastid	18.48	21.35

Protein Annotations

EnsemblPlants:CDY55126	EnsemblPlantsGene:GSBRNA2T00016423001	GO:A0A078IUM3	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:AA_transpt_TM	PANTHER:PTHR22950	PANTHER:PTHR22950:SF313	PFAM:PF01490	ProteinID:CDY55126	ProteinID:CDY55126.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EEB737	UniProt:A0A078IUM3	MapMan:24.2.3.4.7	:

Description

BnaA03g55030DBnaA03g55030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IUM3]

Coordinates

chrLK033376:+:47373..50322

Molecular Weight (calculated)

55830.2 Da

IEP (calculated)

7.029

GRAVY (calculated)

0.400

Length

514 amino acids

Sequence
(BLAST)

001: MKPDETFEQE REDLYQTDEE DEESQAGSSV PSTPLSRSGS NNDPVSWPRS YRQSMDMLTG VTPPMRTSFV SSFHRRRQSS VSGSFTSSTN KQQLLIDKDK
101: DEIQNNVVTS IKSFLASHLN LSAPEDLSFP QETRSCTFSQ SVLNGINVLC GVALLTMPYA VKEGGWLGLF ILFSFGVITF YTGILLKRCL ENSPGIHTYP
201: DIGQAAFGTT GRILVSILLY VELYASCVEY IIMMSDNLSG MFPNTSLYIS GLSLDSKQVF AITTTIIVLP TVWLRDLSLL SYLSAGGVFS SILLALCLFW
301: AGSVGGVGFH LTGKALDIAN LPVAIGIYGF GFGSHSVFPN IYSSMKEPSK FPLKPLAVCG YTMFGDAIQS QFTLNIPQHF TSSKIAAWTA VVTPMTKYAL
401: TITPVVLSLE ELIPSSSRKM KSKGVSMLFR SVLVLSTLVV ALTVPFFATV AALIGSFIAM LIALIFPCLC YMSIMKGRLS NSQMGICIFI VIIGVVSGCC
501: GTYSAIARLI GEMA

Best Arabidopsis Sequence Match ( AT5G02170.1 )
(BLAST)

001: MKQNETFDQE REDLYHTFDE EDEESQTESS VPSTPLSRNR SEDVPVPWPR SYRQSMDLLT GVTPPTSTSF VSSFRQRRQS SVFGSFTSSP SKQQLLIDKD
101: EIQSSVVSSI KSFLASHLQL SVPGDLLTPQ ENRSCTFSQS VLNGINVLCG VALLTMPYAV KEGGWLGLFI LFSFGIITFY TGILLKRCLE NSPGIHTYPD
201: IGQAAFGTTG RILVSILLYV ELYASCVEYI IMMSDNLSRM FPNTSLYING FSLDSTQVFA ITTTLIVLPT VWLKDLSLLS YLSAGGVISS ILLALCLFWA
301: GSVDGVGFHI SGQALDITNI PVAIGIYGFG FGSHSVFPNI YSSMKEPSKF PTVLLISFAF CTLFYIAVAV CGFTMFGDAI QSQFTLNMPP HFTSSKIAVW
401: TAVVTPMTKY ALTITPVMLS LEELIPSSSR KMRSKGVSML FRTILVLSTL VVALTVPFFA TVAALIGSFI AMLIALIFPC LCYISIMKGR LTNFQIGICI
501: LIVIIGIVSG CCGTYSAIAR LIGEMT

Arabidopsis Description

AVT1EAmino acid transporter AVT1E [Source:UniProtKB/Swiss-Prot;Acc:Q8LPF4]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.