CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74865	Canola	plasma membrane	98.36	97.83
CDX93284	Canola	cytosol, nucleus, plasma membrane	90.35	90.84
AT2G39130.2	Thale cress	cytosol, nucleus, plasma membrane	90.53	90.36
CDY18351	Canola	plastid	82.7	89.19
CDX78269	Canola	plasma membrane	74.5	77.17
CDX73443	Canola	cytosol, nucleus, plasma membrane	73.04	74.67
Solyc03g063030.2.1	Tomato	plasma membrane	30.78	71.91
VIT_13s0019g04660.t01	Wine grape	cytosol, nucleus, plasma membrane	72.68	70.87
KRG91942	Soybean	plasma membrane	69.76	70.4
KRH34828	Soybean	plasma membrane	68.85	67.38
Solyc11g008440.1.1	Tomato	cytosol, nucleus, plasma membrane	67.76	67.03
Solyc03g063040.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	14.94	66.67
KRG99573	Soybean	cytosol, nucleus, plasma membrane	12.93	66.36
PGSC0003DMT400036273	Potato	cytosol, nucleus, plasma membrane	52.82	65.32
GSMUA_Achr1P03170_001	Banana	cytosol, nucleus, plasma membrane	65.03	63.41
GSMUA_Achr5P10650_001	Banana	cytosol, nucleus, plasma membrane	62.66	62.09
PGSC0003DMT400019190	Potato	cytosol, nucleus, plasma membrane	66.12	60.3
Zm00001d044994_P001	Maize	cytosol, plasma membrane, vacuole	16.58	59.48
TraesCS2A01G052500.1	Wheat	plasma membrane	57.74	57.22
TraesCSU01G023100.1	Wheat	cytosol, peroxisome, plasma membrane	57.92	57.09
TraesCS2B01G065200.1	Wheat	cytosol, peroxisome, plasma membrane	57.56	56.73
Zm00001d004340_P002	Maize	plasma membrane	58.83	56.67
HORVU2Hr1G008090.4	Barley	cytosol, peroxisome, plasma membrane	57.74	56.41
Os02t0101000-01	Rice	cytosol, nucleus, plasma membrane	57.74	55.52
Os04t0201800-00	Rice	plasma membrane, plastid	40.62	55.47
Zm00001d048577_P001	Maize	cytosol, nucleus, plasma membrane	55.92	54.14
EES06091	Sorghum	plasma membrane	56.65	53.99
TraesCS6B01G007400.1	Wheat	cytosol, peroxisome, plasma membrane	55.19	53.82
TraesCS6A01G002400.1	Wheat	cytosol, nucleus, plasma membrane	55.01	53.36
Zm00001d043640_P001	Maize	plasma membrane	16.39	53.25
TraesCS6D01G003200.1	Wheat	cytosol, nucleus, plasma membrane	55.19	53.16
EER89806	Sorghum	cytosol, nucleus, plasma membrane	54.28	52.19
HORVU6Hr1G001480.1	Barley	plasma membrane	55.01	50.84
Solyc03g063050.1.1	Tomato	extracellular, plasma membrane	24.41	50.38
CDX73974	Canola	cytosol, nucleus, plasma membrane	36.79	49.39
KRH38592	Soybean	endoplasmic reticulum	21.49	49.37
KXG25873	Sorghum	plasma membrane	58.65	48.94
CDY07919	Canola	cytosol, nucleus, plasma membrane	46.27	48.11
Zm00001d037057_P001	Maize	cytosol, nucleus, plasma membrane	45.9	47.91
CDY55126	Canola	plasma membrane	44.63	47.67
CDY40336	Canola	plasma membrane	47.18	47.35
CDY10463	Canola	plasma membrane	46.63	46.89
CDY35425	Canola	plasma membrane	41.17	43.46
CDY22507	Canola	plasma membrane	40.98	43.27
CDY55127	Canola	cytosol, plasma membrane, plastid	45.54	42.81
CDX73972	Canola	extracellular, plastid	10.2	42.75
CDX80808	Canola	plasma membrane	19.67	42.69
CDY23868	Canola	cytosol, nucleus, plasma membrane	40.98	42.53
CDX79951	Canola	cytosol, nucleus, plasma membrane	40.8	42.34
CDY06942	Canola	cytosol, peroxisome, plasma membrane	41.17	42.32
CDY67831	Canola	cytosol, peroxisome, plasma membrane	40.8	42.03
CDX80809	Canola	plasma membrane	45.36	41.99
CDX91000	Canola	plasma membrane	29.51	37.67
CDX85556	Canola	plasma membrane	29.33	37.53
CDX86397	Canola	plasma membrane	26.41	35.8
CDX85233	Canola	plasma membrane	26.41	35.8
CDY44419	Canola	plasma membrane	26.23	35.56
CDY38090	Canola	plasma membrane	23.13	29.33
CDY21456	Canola	plasma membrane	18.4	25.06
CDY04048	Canola	plasma membrane	26.41	25.0
CDY70145	Canola	plasma membrane	18.21	24.81
CDY59097	Canola	plastid	19.67	24.38
CDY54797	Canola	plastid	19.49	24.04
CDY01068	Canola	plasma membrane	18.21	23.87
CDY08487	Canola	plasma membrane	18.03	23.74
CDY47026	Canola	peroxisome, plastid	18.58	23.67
CDY42861	Canola	peroxisome	18.4	23.6
CDY53922	Canola	plasma membrane	18.03	23.24
CDX73848	Canola	plasma membrane	18.03	23.24
CDX85489	Canola	vacuole	18.03	22.92

Protein Annotations

EnsemblPlants:CDY44630	EnsemblPlantsGene:GSBRNA2T00080582001	GO:A0A078I1A6	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:AA_transpt_TM	PANTHER:PTHR22950	PANTHER:PTHR22950:SF240	PFAM:PF01490	ProteinID:CDY44630	ProteinID:CDY44630.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EEB6C8	UniProt:A0A078I1A6	MapMan:24.2.3.4.7	:

Description

BnaC04g06320DBnaC04g06320D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I1A6]

Coordinates

chrLK032597:-:93070..97540

Molecular Weight (calculated)

59840.4 Da

IEP (calculated)

5.015

GRAVY (calculated)

0.321

Length

549 amino acids

Sequence
(BLAST)

001: MNHVPSDQSF YIESEEEDDR KDYEEEEDDD QSHSYSSDAN DDNQTQTKPS SYTTAWPQSY RQSIDLYSSV PSPNIGFLGN NSVTRFGSSF LSSSLIRRHT
101: PESLPAVTKP LLEADEQALP PPPKHRLSSH GLLSPAPSRR GSMRKDEKVS MVSHEIPMSR NSSYGQAVLN GLNVLCGVGI LSTPYAAKEG GWLGLMILFI
201: YGLLSFYTGI LLRYCLDSES DLETYPDIGQ AAFGTTGRIF VSIVLYLELY ACCVEYIILE SDNLSSLFPN AAFGIGGFEL DARHLFAILT TLAVLPTVWL
301: RDLSVLSYIS AGGVIASVLV VLCLFWIGLV DEVGIHSKGT TLNLSTLPVA IGLYGYCYSG HAVFPNIYTS MAKPTQYPAV LLTCFGICTL MYAGVAVMGY
401: TMFGEATESQ FTLNLPQDLV ATKIAVWTTV KSTYALTISP VALSLEELIP ERHNKSHWYA IAIRTALVFS TLLVGLSIPF FGLVMSLIGS LLTMLVTLIL
501: PPVCFLSIVR GKVTSTQMLL CVLIIVVGAI SSVIGSYSAL SKIIQKLSS

Best Arabidopsis Sequence Match ( AT2G39130.1 )
(BLAST)

001: MNHVPSDQSF YIESEDEDDR KDYVEEDGGS HSDSSDDVYD ENQAHIKPSS YTTAWPQSYR QSIDLYSSVP SPGIGFLGNN SMTRFGSSFL SSGLIRRHTP
101: ESLPTVTKPL LEEQADEQAL PKHRLSSQGL LSPIPSRRGS MRKDEKSSMV SHEIPMSRNS SYGQAVLNGL NVLCGVGILS TPYAAKEGGW LGLMILFVYG
201: LLSFYTGILL RYCLDSESDL ETYPDIGQAA FGTTGRIFVS IVLYLELYAC CVEYIILESD NLSSLYPNAA LSIGGFQLDA RHLFALLTTL AVLPTVWLRD
301: LSVLSYISAG GVIASVLVVL CLFWIGLVDE VGIHSKGTTL NLSTLPVAIG LYGYCYSGHA VFPNIYTSMA KPSQYPAVLL TCFGICTLMY AGVAVMGYTM
401: FGESTQSQFT LNLPQDLIAT KIAVWTTVVN PFTKYALTIS PVAMSLEELI PSRHIRSHWY AIGIRTLLVF STLLVGLAIP FFGLVMSLIG SLLTMLVTLI
501: LPPACFLSIV RRKVTPTQMM LCVLIIIVGA ISSVIGSYSA LSKIVEKLTN

Arabidopsis Description

AVT1CAmino acid transporter AVT1C [Source:UniProtKB/Swiss-Prot;Acc:F4IUW3]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.