Factsheet for VIT_13s0019g04660.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
plasma membrane 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG91942	Soybean	plasma membrane	74.78	77.39
Bra007103.1-P	Field mustard	plasma membrane	53.29	76.14
CDY18351	Canola	plastid	68.03	75.25
Solyc03g063030.2.1	Tomato	plasma membrane	31.26	74.89
KRH34828	Soybean	plasma membrane	73.71	73.97
AT2G39130.2	Thale cress	cytosol, nucleus, plasma membrane	71.76	73.45
Solyc11g008440.1.1	Tomato	cytosol, nucleus, plasma membrane	72.29	73.33
CDX93284	Canola	cytosol, nucleus, plasma membrane	70.87	73.08
KRG99573	Soybean	cytosol, nucleus, plasma membrane	13.85	72.9
Bra017088.1-P	Field mustard	cytosol, nucleus, plasma membrane	70.69	72.89
CDY44630	Canola	plasma membrane	70.87	72.68
CDX74865	Canola	plasma membrane	70.69	72.1
Bra005061.1-P	Field mustard	cytosol, nucleus, plasma membrane	58.61	71.58
CDX78269	Canola	plasma membrane	67.32	71.51
Solyc03g063040.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	15.28	69.92
CDX73443	Canola	cytosol, nucleus, plasma membrane	66.61	69.83
PGSC0003DMT400036273	Potato	cytosol, nucleus, plasma membrane	54.88	69.59
GSMUA_Achr1P03170_001	Banana	cytosol, nucleus, plasma membrane	68.92	68.92
GSMUA_Achr5P10650_001	Banana	cytosol, nucleus, plasma membrane	65.19	66.25
PGSC0003DMT400019190	Potato	cytosol, nucleus, plasma membrane	70.16	65.61
AT3G54830.1	Thale cress	nucleus	61.63	63.55
Zm00001d044994_P001	Maize	cytosol, plasma membrane, vacuole	16.7	61.44
TraesCS2B01G065200.1	Wheat	cytosol, peroxisome, plasma membrane	59.5	60.14
TraesCS2A01G052500.1	Wheat	plasma membrane	58.97	59.93
Zm00001d004340_P002	Maize	plasma membrane	60.39	59.65
TraesCSU01G023100.1	Wheat	cytosol, peroxisome, plasma membrane	58.97	59.6
Os02t0101000-01	Rice	cytosol, nucleus, plasma membrane	60.39	59.54
HORVU2Hr1G008090.4	Barley	cytosol, peroxisome, plasma membrane	59.15	59.25
Os04t0201800-00	Rice	plasma membrane, plastid	41.74	58.46
EES06091	Sorghum	plasma membrane	59.68	58.33
Zm00001d048577_P001	Maize	cytosol, nucleus, plasma membrane	58.44	58.02
TraesCS6B01G007400.1	Wheat	cytosol, peroxisome, plasma membrane	57.9	57.9
TraesCS6A01G002400.1	Wheat	cytosol, nucleus, plasma membrane	58.08	57.77
TraesCS6D01G003200.1	Wheat	cytosol, nucleus, plasma membrane	57.9	57.19
EER89806	Sorghum	cytosol, nucleus, plasma membrane	56.66	55.87
HORVU6Hr1G001480.1	Barley	plasma membrane	58.79	55.72
Zm00001d043640_P001	Maize	plasma membrane	15.81	52.66
Solyc03g063050.1.1	Tomato	extracellular, plasma membrane	24.51	51.88
KXG25873	Sorghum	plasma membrane	60.21	51.52
KRH38592	Soybean	endoplasmic reticulum	21.67	51.05
Zm00001d037057_P001	Maize	cytosol, nucleus, plasma membrane	47.07	50.38
VIT_01s0026g02500.t01	Wine grape	plasma membrane	33.57	45.99
VIT_08s0007g05210.t01	Wine grape	plasma membrane	39.61	43.13
VIT_14s0108g00690.t01	Wine grape	plasma membrane	31.26	42.21
VIT_14s0108g00630.t01	Wine grape	plasma membrane	31.44	41.36
VIT_06s0061g00570.t01	Wine grape	plasma membrane	18.83	41.25
VIT_14s0108g00620.t01	Wine grape	plasma membrane	30.91	40.65
VIT_19s0027g01890.t01	Wine grape	plasma membrane	23.62	38.33
VIT_06s0009g01140.t01	Wine grape	plasma membrane	27.89	37.29
VIT_19s0027g01880.t01	Wine grape	plasma membrane	26.82	37.1
VIT_19s0027g01860.t01	Wine grape	plasma membrane, plastid	26.29	36.63
VIT_19s0027g01870.t01	Wine grape	plasma membrane, plastid	26.29	36.36
VIT_05s0062g01150.t01	Wine grape	plasma membrane	26.82	34.79
VIT_03s0038g03900.t01	Wine grape	plasma membrane	19.01	25.12
VIT_07s0031g02140.t01	Wine grape	plasma membrane	18.29	24.41
VIT_05s0062g01130.t01	Wine grape	plasma membrane	12.43	21.81

Protein Annotations

EntrezGene:100249618	wikigene:100249618	MapMan:24.2.3.4.7	InterPro:AA_transpt_TM	ProteinID:CCB56158	ProteinID:CCB56158.1
UniProt:F6HND9	EMBL:FN595998	GO:GO:0003333	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0015171	GO:GO:0016020	GO:GO:0016021	EntrezGene:LOC100249618
wikigene:LOC100249618	PFAM:PF01490	PANTHER:PTHR22950	PANTHER:PTHR22950:SF240	TIGR:TC65339	TMHMM:TMhelix
UniParc:UPI0002109B75	ArrayExpress:VIT_13s0019g04660	EnsemblPlantsGene:VIT_13s0019g04660	EnsemblPlants:VIT_13s0019g04660.t01	RefSeq:XP_002270908	RefSeq:XP_002270908.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr13:-:6143145..6153687

Molecular Weight (calculated)

61257.3 Da

IEP (calculated)

6.691

GRAVY (calculated)

0.376

Length

563 amino acids

Sequence
(BLAST)

001: MNNSVSDHSF YIESDEEDEE NMSNRGNNDG HDSDSSHSST EIEQQNKPSS YNTSWPQSYR QSIDLYSSVP SPSIGFLGTP SLSRLGSSFL SSSLTRRHTP
101: EVLSSLVKPL LPSVADEQQE QQRRSSHSLL PPIPSRRSYI KKAGLDQKPH KVSHEVPISR QSSYGQAVLN GMNILCGVGI LSTPYAVKEG GWVGLSILLI
201: FALLSFYTGI LLRYCLDSAP GLETYPDIGQ AAFGTTGRFA ISIILYVELY ACCVEYIILE SDNLSSLFPN AHLNFGVFHL GSHHLFALMT ALAVLPTVWL
301: RDLSVLSYIS AGGVVASILV VLCLFWVGLV DQVGFQSEGT VLNLTNLPVA IGLYGYCYSG HAVFPNIYTS MAKPSQYPSV LLISFAICTL LYAGVAVLGY
401: QMFGESTLSQ FTLNMPQDLV ASKIAVWTTV VNPFTKYPFS NIIRFSATYA LTMSPVAMSL EELIPSNQSK SHMYAILIRT ALVISTLLVG LTVPFFGLVM
501: ALIGSLLTML VTLILPCACF LSILRGKITR FQGSLCILII AVGVVSSAFG TYSALAKIIE KLS

Best Arabidopsis Sequence Match ( AT2G39130.1 )
(BLAST)

001: MNHVPSDQSF YIESEDEDDR KDYVEEDGGS HSDSSDDVYD ENQAHIKPSS YTTAWPQSYR QSIDLYSSVP SPGIGFLGNN SMTRFGSSFL SSGLIRRHTP
101: ESLPTVTKPL LEEQADEQAL PKHRLSSQGL LSPIPSRRGS MRKDEKSSMV SHEIPMSRNS SYGQAVLNGL NVLCGVGILS TPYAAKEGGW LGLMILFVYG
201: LLSFYTGILL RYCLDSESDL ETYPDIGQAA FGTTGRIFVS IVLYLELYAC CVEYIILESD NLSSLYPNAA LSIGGFQLDA RHLFALLTTL AVLPTVWLRD
301: LSVLSYISAG GVIASVLVVL CLFWIGLVDE VGIHSKGTTL NLSTLPVAIG LYGYCYSGHA VFPNIYTSMA KPSQYPAVLL TCFGICTLMY AGVAVMGYTM
401: FGESTQSQFT LNLPQDLIAT KIAVWTTVVN PFTKYALTIS PVAMSLEELI PSRHIRSHWY AIGIRTLLVF STLLVGLAIP FFGLVMSLIG SLLTMLVTLI
501: LPPACFLSIV RRKVTPTQMM LCVLIIIVGA ISSVIGSYSA LSKIVEKLTN

Arabidopsis Description

AVT1CAmino acid transporter AVT1C [Source:UniProtKB/Swiss-Prot;Acc:F4IUW3]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.