Factsheet for Bra017088.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plasma membrane

Predictor Summary:

nucleus 2
cytosol 1
plasma membrane 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93284	Canola	cytosol, nucleus, plasma membrane	99.63	99.63
CDY18351	Canola	plastid	89.74	96.27
Bra005061.1-P	Field mustard	cytosol, nucleus, plasma membrane	75.82	89.8
AT2G39130.2	Thale cress	cytosol, nucleus, plasma membrane	88.83	88.18
Bra007103.1-P	Field mustard	plasma membrane	57.51	79.7
VIT_13s0019g04660.t01	Wine grape	cytosol, nucleus, plasma membrane	72.89	70.69
KRG91942	Soybean	plasma membrane	69.23	69.49
Solyc03g063030.2.1	Tomato	plasma membrane	29.67	68.94
Solyc03g063040.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	15.2	67.48
KRG99573	Soybean	cytosol, nucleus, plasma membrane	13.19	67.29
KRH34828	Soybean	plasma membrane	68.86	67.02
Solyc11g008440.1.1	Tomato	cytosol, nucleus, plasma membrane	66.85	65.77
PGSC0003DMT400036273	Potato	cytosol, nucleus, plasma membrane	52.75	64.86
GSMUA_Achr1P03170_001	Banana	cytosol, nucleus, plasma membrane	64.29	62.34
GSMUA_Achr5P10650_001	Banana	cytosol, nucleus, plasma membrane	61.72	60.83
PGSC0003DMT400019190	Potato	cytosol, nucleus, plasma membrane	65.38	59.3
TraesCS2A01G052500.1	Wheat	plasma membrane	56.41	55.6
Zm00001d044994_P001	Maize	cytosol, plasma membrane, vacuole	15.57	55.56
TraesCSU01G023100.1	Wheat	cytosol, peroxisome, plasma membrane	56.23	55.12
TraesCS2B01G065200.1	Wheat	cytosol, peroxisome, plasma membrane	56.04	54.94
HORVU2Hr1G008090.4	Barley	cytosol, peroxisome, plasma membrane	56.41	54.8
Zm00001d004340_P002	Maize	plasma membrane	57.14	54.74
Os02t0101000-01	Rice	cytosol, nucleus, plasma membrane	56.59	54.12
Os04t0201800-00	Rice	plasma membrane, plastid	39.38	53.48
TraesCS6B01G007400.1	Wheat	cytosol, peroxisome, plasma membrane	54.76	53.11
EES06091	Sorghum	plasma membrane	55.68	52.78
Zm00001d043640_P001	Maize	plasma membrane	16.3	52.66
Zm00001d048577_P001	Maize	cytosol, nucleus, plasma membrane	54.58	52.56
TraesCS6A01G002400.1	Wheat	cytosol, nucleus, plasma membrane	54.4	52.47
TraesCS6D01G003200.1	Wheat	cytosol, nucleus, plasma membrane	54.76	52.46
EER89806	Sorghum	cytosol, nucleus, plasma membrane	53.85	51.49
Solyc03g063050.1.1	Tomato	extracellular, plasma membrane	24.54	50.38
HORVU6Hr1G001480.1	Barley	plasma membrane	54.58	50.17
KRH38592	Soybean	endoplasmic reticulum	21.06	48.12
Zm00001d037057_P001	Maize	cytosol, nucleus, plasma membrane	45.97	47.72
Bra005712.1-P	Field mustard	plasma membrane	43.59	47.41
KXG25873	Sorghum	plasma membrane	56.78	47.11
Bra001315.1-P	Field mustard	cytosol, peroxisome, plasma membrane	45.42	46.97
Bra009608.1-P	Field mustard	plasma membrane	45.6	45.52
Bra000217.1-P	Field mustard	plasma membrane	40.66	42.69
Bra004605.1-P	Field mustard	cytosol, nucleus, plasma membrane	40.48	41.78
Bra016949.1-P	Field mustard	cytosol, peroxisome, plasma membrane	40.48	41.39
Bra025369.1-P	Field mustard	plasma membrane	25.64	34.57
Bra033075.1-P	Field mustard	plasma membrane	25.46	34.32
Bra023581.1-P	Field mustard	plasma membrane	16.12	27.94
Bra000591.1-P	Field mustard	plasma membrane	17.58	23.76
Bra029326.1-P	Field mustard	peroxisome	18.5	23.6
Bra001425.1-P	Field mustard	plasma membrane	17.95	23.0
Bra034803.1-P	Field mustard	plasma membrane	17.95	22.95
Bra033558.1-P	Field mustard	plasma membrane	14.29	21.79

Protein Annotations

EnsemblPlants:Bra017088.1	EnsemblPlants:Bra017088.1-P	EnsemblPlantsGene:Bra017088	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:AA_transpt_TM	PANTHER:PTHR22950	PANTHER:PTHR22950:SF240	PFAM:PF01490	SEG:seg	TMHMM:TMhelix
UniParc:UPI0002544B98	UniProt:M4DKQ7	MapMan:24.2.3.4.7	:	:	:

Description

AT2G39130 (E=3e-235) | amino acid transporter family protein

Coordinates

chrA04:-:16665664..16669147

Molecular Weight (calculated)

59735.9 Da

IEP (calculated)

5.030

GRAVY (calculated)

0.240

Length

546 amino acids

Sequence
(BLAST)

001: MNHVPSDQSF YIESEDEDDR KDYAEEEEEE DGHSHSDSSD ANDEHHTQNK PNSYTTAWPQ SYRQSIDLYS SVPSPSIGFL GNNSMTRFGS SFLSSSLIRR
101: HTPESLPVVT KPLLEAEEQA PPPPKHRLSS HGLLPPVPSR RSSMRKDERV SHEVPMSRNS SYGQAVMNGL NVLCGVGILS TPYAAKEGGW LGLGILFIYG
201: LLSFYTGILL RYCLDSESDL ETYPDIGQAA FGTTGRIFVS IVLYLELYAC CVEYIILESD NLSSLYPNAG LSIGGFELDA RHLFALLTTI AVLPTVWLRD
301: LSLLSYISAG GVIASVLVVL SLFWIGLVDD VGIHSKGTTL NLSTLPVAIG LYGYCYSGHA VFPNIYTSMA NPNQYPSALL TCFTICTLMY AGVAFMGYTM
401: FGEATESQFT LNLPQDLVAT KIAVWTTEST YALTLSPVAL SLEELIPSRH NKSHWYAIAI RTALVFSTLL VGLAIPFFGL VMSLIGSLLT MLVTLILPPA
501: CFLSIVRRKV TRTQMMLCVL IIVVGAISSV IGSYSALSQI IEKLSS

Best Arabidopsis Sequence Match ( AT2G39130.1 )
(BLAST)

001: MNHVPSDQSF YIESEDEDDR KDYVEEDGGS HSDSSDDVYD ENQAHIKPSS YTTAWPQSYR QSIDLYSSVP SPGIGFLGNN SMTRFGSSFL SSGLIRRHTP
101: ESLPTVTKPL LEEQADEQAL PKHRLSSQGL LSPIPSRRGS MRKDEKSSMV SHEIPMSRNS SYGQAVLNGL NVLCGVGILS TPYAAKEGGW LGLMILFVYG
201: LLSFYTGILL RYCLDSESDL ETYPDIGQAA FGTTGRIFVS IVLYLELYAC CVEYIILESD NLSSLYPNAA LSIGGFQLDA RHLFALLTTL AVLPTVWLRD
301: LSVLSYISAG GVIASVLVVL CLFWIGLVDE VGIHSKGTTL NLSTLPVAIG LYGYCYSGHA VFPNIYTSMA KPSQYPAVLL TCFGICTLMY AGVAVMGYTM
401: FGESTQSQFT LNLPQDLIAT KIAVWTTVVN PFTKYALTIS PVAMSLEELI PSRHIRSHWY AIGIRTLLVF STLLVGLAIP FFGLVMSLIG SLLTMLVTLI
501: LPPACFLSIV RRKVTPTQMM LCVLIIIVGA ISSVIGSYSA LSKIVEKLTN

Arabidopsis Description

AVT1CAmino acid transporter AVT1C [Source:UniProtKB/Swiss-Prot;Acc:F4IUW3]
SUBAcon: [cytosol,nucleus,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.