Factsheet for Bra025369.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 3
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	golgi
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86397	Canola	plasma membrane	100.0	100.0
CDX85233	Canola	plasma membrane	99.75	99.75
Bra033075.1-P	Field mustard	plasma membrane	93.09	93.09
AT3G28960.2	Thale cress	plasma membrane	89.88	89.88
VIT_14s0108g00690.t01	Wine grape	plasma membrane	61.23	59.47
VIT_14s0108g00630.t01	Wine grape	plasma membrane	60.74	57.48
PGSC0003DMT400076795	Potato	plasma membrane	47.65	57.44
KRH40411	Soybean	plasma membrane	37.28	56.13
VIT_06s0061g00570.t01	Wine grape	plasma membrane	35.56	56.03
VIT_14s0108g00620.t01	Wine grape	plasma membrane	59.01	55.84
KRH40095	Soybean	plasma membrane	57.78	54.93
VIT_06s0009g01140.t01	Wine grape	plasma membrane	56.54	54.39
KRH40094	Soybean	plasma membrane	56.79	53.86
PGSC0003DMT400076791	Potato	plasma membrane	55.8	53.81
KRH01177	Soybean	plasma membrane	56.54	53.38
KRH30199	Soybean	extracellular, plasma membrane	49.14	53.35
PGSC0003DMT400008751	Potato	plasma membrane	55.8	53.05
Solyc03g013160.2.1	Tomato	plasma membrane	55.56	52.82
Solyc03g013440.2.1	Tomato	plasma membrane	43.7	51.16
KRG98784	Soybean	plasma membrane	45.68	50.27
KRG98240	Soybean	plasma membrane	52.1	48.28
KRH30194	Soybean	plasma membrane	51.85	48.05
KRH75803	Soybean	mitochondrion	29.88	38.66
Bra007103.1-P	Field mustard	plasma membrane	33.83	34.77
Bra000217.1-P	Field mustard	plasma membrane	39.75	30.96
Bra016949.1-P	Field mustard	cytosol, peroxisome, plasma membrane	40.0	30.34
Bra004605.1-P	Field mustard	cytosol, nucleus, plasma membrane	38.52	29.49
Bra023581.1-P	Field mustard	plasma membrane	21.73	27.94
Bra001315.1-P	Field mustard	cytosol, peroxisome, plasma membrane	35.31	27.08
Bra009608.1-P	Field mustard	plasma membrane	36.54	27.06
Bra005712.1-P	Field mustard	plasma membrane	32.59	26.29
Bra005061.1-P	Field mustard	cytosol, nucleus, plasma membrane	29.38	25.81
Bra017088.1-P	Field mustard	cytosol, nucleus, plasma membrane	34.57	25.64
Bra000591.1-P	Field mustard	plasma membrane	23.21	23.27
Bra029326.1-P	Field mustard	peroxisome	22.96	21.73
Bra033558.1-P	Field mustard	plasma membrane	19.01	21.51
Bra001425.1-P	Field mustard	plasma membrane	22.47	21.36
Bra034803.1-P	Field mustard	plasma membrane	20.74	19.67

Protein Annotations

EnsemblPlants:Bra025369.1	EnsemblPlants:Bra025369.1-P	EnsemblPlantsGene:Bra025369	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:AA_transpt_TM	PANTHER:PTHR22950	PANTHER:PTHR22950:SF280	PFAM:PF01490	SEG:seg	TMHMM:TMhelix
UniParc:UPI000253FAE9	UniProt:M4E9B3	MapMan:24.2.3.4.7	:	:	:

Description

AT3G28960 (E=2e-196) | amino acid transporter family protein

Coordinates

chrA06:+:21917267..21918668

Molecular Weight (calculated)

44210.0 Da

IEP (calculated)

9.290

GRAVY (calculated)

0.616

Length

405 amino acids

Sequence
(BLAST)

001: MEEDNHEKQL DDGGSSSLFK TCFNALNALS GIGILSVPYS LARGGWLSLS LLLLLAATAF YTSLLITKCM NADRTIKTYP DIGERAFGRP GRIIVSVFMH
101: LELYLVTTGF LILEGDNLHN LFPGFNIKLM GLRLNGKQSF MASVALVIMP TLWWDSLSVL SYVSMSGVLA TAVTLGSISW VGAFDGIGFH QSGKLINWSG
201: IPTALSLYAF CYGAHPVLPT LYSSMKSKHQ FNNVLLISFI LCTIGYTSMA VLGYLMYGSN TLSQITLNLP IHKTSSKVAI YTTLVNPIAK YALMITPTVN
301: TIKDWFPKKY AKKSYLHLSI STLFIASSVV IAETLPFFGY MMSLVGALLS VTVSILLPCL CYLKISGNFK KLGFETVMLF GMVVMSVPIG VLGTYIAIRE
401: MVGSV

Best Arabidopsis Sequence Match ( AT3G28960.1 )
(BLAST)

001: MEEDNQEIQR DNVGSSSFFK TCFNALNALS GIGILSVPYS LARGGWLSLS LLLLLAVTAF YTSLLITKCM NADRNIKTYP DIGERAFGRP GRIIVSVFMH
101: LELYLVTTGF LILEGDNLHN LFPGFTIEMI GLRLNGKQAF MATVAFVIMP TLWWDNLSVL SYVSMSGVLA TTVTLGSISW IGAFDGIGFH QKGKLINWSG
201: IPTALSLYAF CYGAHPVLPT LYSSMKSKHQ FNNVLLICFI LCTIGYTSMA VLGYLMYGSQ TLSQITLNLP IHKTSSKVAI YTTLVNPVAK YALMITPTVN
301: TIKDWFPSRY SKKAYLHLLI STFFIISSVV IAETLPFFGY MMSLVGALLS VTVSILLPCL CYLKIFGNYK KIGCETIMLF GMVVMSVFVG VIGTYIALRD
401: IIGSV

Arabidopsis Description

AVT1IAmino acid transporter AVT1I [Source:UniProtKB/Swiss-Prot;Acc:F4J1Q9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.