Factsheet for VIT_06s0009g01140.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 4
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	golgi
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0108g00690.t01	Wine grape	plasma membrane	66.03	66.67
VIT_14s0108g00630.t01	Wine grape	plasma membrane	67.22	66.12
VIT_14s0108g00620.t01	Wine grape	plasma membrane	65.8	64.72
VIT_06s0061g00570.t01	Wine grape	plasma membrane	39.19	64.2
PGSC0003DMT400076795	Potato	plasma membrane	47.51	59.52
PGSC0003DMT400076791	Potato	plasma membrane	57.48	57.62
AT3G28960.2	Thale cress	plasma membrane	55.34	57.53
Bra025369.1-P	Field mustard	plasma membrane	54.39	56.54
CDX86397	Canola	plasma membrane	54.39	56.54
CDX85233	Canola	plasma membrane	54.16	56.3
Bra033075.1-P	Field mustard	plasma membrane	53.68	55.8
CDY44419	Canola	plasma membrane	53.68	55.8
KRH01177	Soybean	plasma membrane	56.53	55.48
KRH40095	Soybean	plasma membrane	56.06	55.4
KRH40094	Soybean	plasma membrane	55.58	54.8
KRH30199	Soybean	extracellular, plasma membrane	48.46	54.69
KRH40411	Soybean	plasma membrane	34.92	54.65
PGSC0003DMT400008751	Potato	plasma membrane	54.87	54.23
Solyc03g013440.2.1	Tomato	plasma membrane	44.42	54.05
Solyc03g013160.2.1	Tomato	plasma membrane	54.16	53.52
VIT_01s0026g02500.t01	Wine grape	plasma membrane	51.31	52.55
KRG98240	Soybean	plasma membrane	53.68	51.72
KRH30194	Soybean	plasma membrane	53.21	51.26
KRG98784	Soybean	plasma membrane	43.71	50.0
VIT_19s0027g01860.t01	Wine grape	plasma membrane, plastid	47.03	49.01
VIT_19s0027g01890.t01	Wine grape	plasma membrane	39.43	47.84
VIT_19s0027g01880.t01	Wine grape	plasma membrane	44.18	45.7
VIT_19s0027g01870.t01	Wine grape	plasma membrane, plastid	43.71	45.21
CDY04048	Canola	plasma membrane	52.97	38.45
KRH75803	Soybean	mitochondrion	28.03	37.7
VIT_08s0007g05210.t01	Wine grape	plasma membrane	38.48	31.33
VIT_13s0019g04660.t01	Wine grape	cytosol, nucleus, plasma membrane	37.29	27.89
VIT_05s0062g01150.t01	Wine grape	plasma membrane	28.27	27.42
VIT_03s0038g03900.t01	Wine grape	plasma membrane	20.67	20.42
VIT_05s0062g01130.t01	Wine grape	plasma membrane	15.44	20.25
VIT_07s0031g02140.t01	Wine grape	plasma membrane	19.71	19.67

Protein Annotations

EntrezGene:100253027	wikigene:100253027	MapMan:24.2.3.4.7	InterPro:AA_transpt_TM	EMBL:AM488068	ProteinID:CAN62250
ProteinID:CAN62250.1	ProteinID:CBI24387	ProteinID:CBI24387.3	UniProt:D7T1K7	EMBL:FN595504	GO:GO:0003333
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015171
GO:GO:0016020	GO:GO:0016021	EntrezGene:LOC100253027	wikigene:LOC100253027	PFAM:PF01490	PANTHER:PTHR22950
PANTHER:PTHR22950:SF280	TIGR:TC66195	TMHMM:TMhelix	UniParc:UPI00015C93FF	ArrayExpress:VIT_06s0009g01140	EnsemblPlantsGene:VIT_06s0009g01140
EnsemblPlants:VIT_06s0009g01140.t01	unigene:Vvi.7711	RefSeq:XP_002276455	RefSeq:XP_002276455.1	SEG:seg	:

Description

No Description!

Coordinates

chr6:+:12684861..12687590

Molecular Weight (calculated)

46044.2 Da

IEP (calculated)

7.026

GRAVY (calculated)

0.773

Length

421 amino acids

Sequence
(BLAST)

001: MEAQAHVEEF SHTIPLMHDE INRGVDSSTL GTTTFFQTCF NGLNALSGVG ILSIPYALAS GGWLSLILLL AVAFISFYTG LLIQRCMDVD SNIRTYPDIS
101: ERAFGNNGKM IVSILMSIEL YLVATGFLIL EGDNLQNLFP NIGFEILGLR IGGKQSFTII VGLIVLPSVW FDNMSILSYI SVSGILACVI IIGSILWVGA
201: FDGVGFHGTQ TILNWSGIPT SLSLYTFCFS AHLVFPTLYT SMKDKRRFSN ALAICYLFCT ITYTSMATLG CLMFGSKVQS QITLNLPIDK LSSRVAVYTT
301: LISPLSKYAL MVRPILDATE NWFPCDYSKS PLRFVMKTSL VISTIVAALA LPFFGYLMSI VGACLSVTAS ILLPCLCYLK ISGTYRRFGF ELVIIGGIML
401: MGILVAVLGT YTSLVQLIEH L

Best Arabidopsis Sequence Match ( AT3G28960.1 )
(BLAST)

001: MEEDNQEIQR DNVGSSSFFK TCFNALNALS GIGILSVPYS LARGGWLSLS LLLLLAVTAF YTSLLITKCM NADRNIKTYP DIGERAFGRP GRIIVSVFMH
101: LELYLVTTGF LILEGDNLHN LFPGFTIEMI GLRLNGKQAF MATVAFVIMP TLWWDNLSVL SYVSMSGVLA TTVTLGSISW IGAFDGIGFH QKGKLINWSG
201: IPTALSLYAF CYGAHPVLPT LYSSMKSKHQ FNNVLLICFI LCTIGYTSMA VLGYLMYGSQ TLSQITLNLP IHKTSSKVAI YTTLVNPVAK YALMITPTVN
301: TIKDWFPSRY SKKAYLHLLI STFFIISSVV IAETLPFFGY MMSLVGALLS VTVSILLPCL CYLKIFGNYK KIGCETIMLF GMVVMSVFVG VIGTYIALRD
401: IIGSV

Arabidopsis Description

AVT1IAmino acid transporter AVT1I [Source:UniProtKB/Swiss-Prot;Acc:F4J1Q9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.