Factsheet for VIT_19s0027g01860.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

plastid 4
plasma membrane 3
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane, plastid
Any Predictor:	plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plasma membrane
Plant-mPloc:	golgi
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0027g01890.t01	Wine grape	plasma membrane	65.59	76.37
VIT_19s0027g01880.t01	Wine grape	plasma membrane	75.5	74.94
VIT_19s0027g01870.t01	Wine grape	plasma membrane, plastid	74.01	73.46
VIT_14s0108g00690.t01	Wine grape	plasma membrane	52.97	51.32
VIT_06s0061g00570.t01	Wine grape	plasma membrane	32.18	50.58
VIT_14s0108g00630.t01	Wine grape	plasma membrane	52.72	49.77
VIT_14s0108g00620.t01	Wine grape	plasma membrane	52.48	49.53
VIT_06s0009g01140.t01	Wine grape	plasma membrane	49.01	47.03
VIT_01s0026g02500.t01	Wine grape	plasma membrane	44.55	43.8
VIT_05s0062g01150.t01	Wine grape	plasma membrane	31.44	29.26
VIT_08s0007g05210.t01	Wine grape	plasma membrane	36.63	28.63
VIT_13s0019g04660.t01	Wine grape	cytosol, nucleus, plasma membrane	36.63	26.29
VIT_03s0038g03900.t01	Wine grape	plasma membrane	25.25	23.94
VIT_07s0031g02140.t01	Wine grape	plasma membrane	23.27	22.27
VIT_05s0062g01130.t01	Wine grape	plasma membrane	16.34	20.56

Protein Annotations

EntrezGene:100242701	wikigene:100242701	EntrezGene:100853528	wikigene:100853528	MapMan:24.2.3.4.7	UniProt:A5BU34
InterPro:AA_transpt_TM	EMBL:AM471155	ProteinID:CAN75006	ProteinID:CAN75006.1	ProteinID:CCB47186	ProteinID:CCB47186.1
EMBL:FN595234	GO:GO:0003333	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0015171	GO:GO:0016020	GO:GO:0016021	EntrezGene:LOC100242701	wikigene:LOC100242701
EntrezGene:LOC100853528	wikigene:LOC100853528	PFAM:PF01490	PANTHER:PTHR22950	PANTHER:PTHR22950:SF280	TMHMM:TMhelix
UniParc:UPI0001521AB5	ArrayExpress:VIT_19s0027g01860	EnsemblPlantsGene:VIT_19s0027g01860	EnsemblPlants:VIT_19s0027g01860.t01	RefSeq:XP_002265265	RefSeq:XP_002265265.1
RefSeq:XP_003634787	RefSeq:XP_003634787.1	:	:	:	:

Description

No Description!

Coordinates

chr19:-:22137647..22139255

Molecular Weight (calculated)

44120.3 Da

IEP (calculated)

5.834

GRAVY (calculated)

0.891

Length

404 amino acids

Sequence
(BLAST)

001: MANNELRIPL IRTPGSSSFM KASFNGTNAF LGIGFLTIPY ALSSGGWLSL VLFFSIAAMT FYTGLLLVRC MEVDPSILSY YDIAERAFGM KGRMIVMFMM
101: NAEMYLIATG FLILEGDNLQ KLFPEFMIKL GELTLDGKQS FVIITGLLFS ALMLLTDLSM LSYISATGVF SCLVIVVSIF CVGAFDGVGF HAKGSVLLNL
201: DTLPTAVGLY IVSFGGHPVI PSIYMSMRDS CQFSKVLVFS FILATLNYMT IAILGYLMYG DGIESEITLN LPTKVSGRVA IYTTLLIPVT RYSLLVAPIA
301: TAIEGGLSEK YKNQKPVRLL IRVALLISTV IVACVFPYYE SLMAIVGSVF VVSASFLLPC LCYLKISDLN WNWNCEQMGI VGIIVFGILA GVLGTYSSIF
401: ELLT

Best Arabidopsis Sequence Match ( AT3G28960.1 )
(BLAST)

001: MEEDNQEIQR DNVGSSSFFK TCFNALNALS GIGILSVPYS LARGGWLSLS LLLLLAVTAF YTSLLITKCM NADRNIKTYP DIGERAFGRP GRIIVSVFMH
101: LELYLVTTGF LILEGDNLHN LFPGFTIEMI GLRLNGKQAF MATVAFVIMP TLWWDNLSVL SYVSMSGVLA TTVTLGSISW IGAFDGIGFH QKGKLINWSG
201: IPTALSLYAF CYGAHPVLPT LYSSMKSKHQ FNNVLLICFI LCTIGYTSMA VLGYLMYGSQ TLSQITLNLP IHKTSSKVAI YTTLVNPVAK YALMITPTVN
301: TIKDWFPSRY SKKAYLHLLI STFFIISSVV IAETLPFFGY MMSLVGALLS VTVSILLPCL CYLKIFGNYK KIGCETIMLF GMVVMSVFVG VIGTYIALRD
401: IIGSV

Arabidopsis Description

AVT1IAmino acid transporter AVT1I [Source:UniProtKB/Swiss-Prot;Acc:F4J1Q9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.