Factsheet for VIT_08s0007g05210.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g078150.2.1	Tomato	peroxisome	64.6	63.62
PGSC0003DMT400080507	Potato	peroxisome	64.22	63.48
Bra000217.1-P	Field mustard	plasma membrane	60.93	60.58
CDY35425	Canola	plasma membrane	60.93	60.58
CDY22507	Canola	plasma membrane	60.73	60.38
CDY67831	Canola	cytosol, peroxisome, plasma membrane	61.12	59.29
CDY06942	Canola	cytosol, peroxisome, plasma membrane	61.12	59.18
Bra016949.1-P	Field mustard	cytosol, peroxisome, plasma membrane	60.93	58.99
AT2G41190.1	Thale cress	cytosol, peroxisome, plasma membrane	60.93	58.77
CDY23868	Canola	cytosol, nucleus, plasma membrane	59.19	57.84
Bra004605.1-P	Field mustard	cytosol, nucleus, plasma membrane	58.8	57.47
CDX79951	Canola	cytosol, nucleus, plasma membrane	58.8	57.47
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plasma membrane	58.8	56.3
TraesCS6A01G348300.2	Wheat	cytosol, plasma membrane, vacuole	51.84	56.18
KRH16006	Soybean	cytosol	36.75	55.72
Zm00001d052063_P003	Maize	plasma membrane	57.25	54.81
EES07655	Sorghum	plasma membrane	57.64	54.08
TraesCS6D01G331300.1	Wheat	plasma membrane	53.77	53.98
Zm00001d018336_P002	Maize	plasma membrane	57.06	53.93
KRG95106	Soybean	cytosol, peroxisome, plasma membrane	47.97	53.91
TraesCS6A01G348400.1	Wheat	cytosol, peroxisome, plasma membrane	55.13	53.88
TraesCS6B01G382000.2	Wheat	cytosol, peroxisome, plasma membrane	55.51	53.35
TraesCS6D01G331400.2	Wheat	cytosol, peroxisome, plasma membrane	55.13	53.07
KRH77523	Soybean	cytosol, nucleus, plasma membrane	48.55	53.07
EES07657	Sorghum	plasma membrane	53.38	52.87
KRH66774	Soybean	plasma membrane	27.08	52.43
TraesCS6B01G381900.1	Wheat	plasma membrane	50.1	50.68
Zm00001d018340_P001	Maize	cytosol, peroxisome, plasma membrane	51.26	50.19
HORVU6Hr1G083720.2	Barley	plastid	56.29	50.0
Os02t0788800-01	Rice	cytosol, peroxisome, plasma membrane	31.14	49.85
VIT_06s0061g00570.t01	Wine grape	plasma membrane	20.7	41.63
VIT_01s0026g02500.t01	Wine grape	plasma membrane	33.08	41.61
VIT_14s0108g00690.t01	Wine grape	plasma membrane	32.11	39.81
VIT_14s0108g00630.t01	Wine grape	plasma membrane	32.88	39.72
VIT_13s0019g04660.t01	Wine grape	cytosol, nucleus, plasma membrane	43.13	39.61
VIT_14s0108g00620.t01	Wine grape	plasma membrane	31.91	38.55
VIT_06s0009g01140.t01	Wine grape	plasma membrane	31.33	38.48
VIT_19s0027g01860.t01	Wine grape	plasma membrane, plastid	28.63	36.63
VIT_19s0027g01890.t01	Wine grape	plasma membrane	23.6	35.16
VIT_19s0027g01880.t01	Wine grape	plasma membrane	27.66	35.14
VIT_19s0027g01870.t01	Wine grape	plasma membrane, plastid	26.89	34.15
VIT_05s0062g01150.t01	Wine grape	plasma membrane	26.31	31.34
VIT_05s0062g01130.t01	Wine grape	plasma membrane	13.93	22.43
VIT_03s0038g03900.t01	Wine grape	plasma membrane	18.38	22.3
VIT_07s0031g02140.t01	Wine grape	plasma membrane	17.6	21.56

Protein Annotations

EntrezGene:100265815	wikigene:100265815	MapMan:24.2.3.4.7	InterPro:AA_transpt_TM	ProteinID:CCB55330	ProteinID:CCB55330.1
UniProt:F6HKA8	EMBL:FN595991	GO:GO:0003333	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0015171	GO:GO:0016020	GO:GO:0016021	EntrezGene:LOC100265815
wikigene:LOC100265815	PFAM:PF01490	PANTHER:PTHR22950	PANTHER:PTHR22950:SF358	TMHMM:TMhelix	UniParc:UPI00021090F8
ArrayExpress:VIT_08s0007g05210	EnsemblPlantsGene:VIT_08s0007g05210	EnsemblPlants:VIT_08s0007g05210.t01	RefSeq:XP_002266914	RefSeq:XP_002266914.2	SEG:seg

Description

No Description!

Coordinates

chr8:-:19122976..19127607

Molecular Weight (calculated)

56302.5 Da

IEP (calculated)

5.107

GRAVY (calculated)

0.500

Length

517 amino acids

Sequence
(BLAST)

001: MGDKEKQERD SEFLFVIEDD GGDDVVNRIE SSSGDEEVAY GDEGYTSPSV VFSSQQWPQS YRETTDSYTI AASPNFGILG SSLGLRRSSL DIFTKSNLDL
101: DGKTPLLTEQ EKNYQKEDTD RISRTQLSLS EKASFHEQLT GELPISYGCS FTQTVFNGVN VLAGIGLLST PYAVKEAGWA SLAVLVLFAV VCCYTASLLR
201: YCLESKEGII TYPDIGEAAF GRYGRLFVSF VLYTELYSYC VEFIILEGDN LTRLFPGASL NWGGFQLDSL HLFGILTALI VLPTVWLRDL RVISCLSAGG
301: VLATVLIVVS VIFVGITAGI GFHQTGKLVN WGGIPFSIGV YGFCFSGHTV FPNIYQSMAD KTKFSKALIV SILLCVIIYG GIAIVGFLMF GQGTMSQITL
401: NIPRHVFASK IALWTTELLP VRISNSFWCF ILLRTALVIS SVCVAFLLPF FGLVMSLIGS LLSVLVSVII PTLCYLRIMG NKATKAQVIV SSGVAALGVI
501: CAILGTYSSL SQIARQY

Best Arabidopsis Sequence Match ( AT2G41190.1 )
(BLAST)

001: MEDKNNDKEK KTDVTFEDDE DNEDLEDNSS KYENDSETDQ SDLGDLPGDA VDRDDDIDEP FISQVQWPQS FRETTDSYTI AASPIFGSLR SNPPSFYRAS
101: RSNLDVESKA PLLPERHDDS DKASATQSAW SHKGSFAEEL PIGGYGCSVI QTIFNAINVM AGVGLLSTPY TVKEAGWASM VILLLFAVIC CYTATLMKDC
201: FENKTGIITY PDIGEAAFGK YGRILICMLL YTELYSYCVE FIILEGDNLT GLFPGTSLDL LGFRLDSKHL FGILTALIVL PTVWLKDLRI ISYLSAGGVI
301: ATALIAVSVF FLGTTGGIGF HHTGQAVKWN GIPFAIGIYG FCYSGHSVFP NIYQSMADKT KFNKAVITCF IICVLLYGGV AIMGYLMFGE ATLSQITLNM
401: PQDQFFSKVA QWTTVVSPFT KYALLMNPLA RSIEELLPER MSENIWCFLL LRTALVASSV CSAFLIPFFG LMMALIGSLL SILVAIIMPA LCFIKIMGNK
501: ATRTQMILSS IIVAIGVVSG TLGTYSSVAK IIRNYQ

Arabidopsis Description

AVT1AAmino acid transporter AVT1A [Source:UniProtKB/Swiss-Prot;Acc:O80668]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.