Factsheet for TraesCS6A01G348400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plasma membrane, peroxisome

Predictor Summary:

cytosol 1
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, peroxisome, plasma membrane
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G382000.2	Wheat	cytosol, peroxisome, plasma membrane	96.79	95.17
TraesCS6D01G331400.2	Wheat	cytosol, peroxisome, plasma membrane	96.22	94.79
TraesCS6A01G348300.2	Wheat	cytosol, plasma membrane, vacuole	79.77	88.47
HORVU6Hr1G083720.2	Barley	plastid	95.84	87.11
Zm00001d018336_P002	Maize	plasma membrane	80.34	77.7
EES07655	Sorghum	plasma membrane	79.96	76.77
Zm00001d052063_P003	Maize	plasma membrane	77.88	76.3
Os02t0788800-01	Rice	cytosol, peroxisome, plasma membrane	43.67	71.52
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plasma membrane	65.6	64.26
Bra000217.1-P	Field mustard	plasma membrane	57.84	58.85
CDY35425	Canola	plasma membrane	57.84	58.85
CDY22507	Canola	plasma membrane	57.47	58.46
CDY06942	Canola	cytosol, peroxisome, plasma membrane	58.6	58.05
Bra016949.1-P	Field mustard	cytosol, peroxisome, plasma membrane	58.41	57.87
AT2G41190.1	Thale cress	cytosol, peroxisome, plasma membrane	58.6	57.84
CDY67831	Canola	cytosol, peroxisome, plasma membrane	58.22	57.79
PGSC0003DMT400080507	Potato	peroxisome	56.9	57.55
Bra004605.1-P	Field mustard	cytosol, nucleus, plasma membrane	57.47	57.47
CDY23868	Canola	cytosol, nucleus, plasma membrane	57.47	57.47
CDX79951	Canola	cytosol, nucleus, plasma membrane	57.47	57.47
Solyc03g078150.2.1	Tomato	peroxisome	55.39	55.81
VIT_08s0007g05210.t01	Wine grape	plasma membrane	53.88	55.13
KRG95106	Soybean	cytosol, peroxisome, plasma membrane	45.56	52.39
KRH33027	Soybean	plasma membrane	57.66	52.32
KRH71933	Soybean	cytosol, peroxisome, plasma membrane	43.86	52.02
KRH16006	Soybean	cytosol	33.27	51.61
KRH66774	Soybean	plasma membrane	24.2	47.94
KRH77523	Soybean	cytosol, nucleus, plasma membrane	41.97	46.93
TraesCS7A01G188100.1	Wheat	plasma membrane	34.03	45.11
TraesCS2A01G339100.1	Wheat	plasma membrane	34.59	43.06
TraesCS2A01G338600.1	Wheat	plasma membrane	35.54	42.73
TraesCS2A01G338800.1	Wheat	plasma membrane	35.73	42.28
TraesCS6A01G002400.1	Wheat	cytosol, nucleus, plasma membrane	44.8	41.87
TraesCS2A01G282000.1	Wheat	endoplasmic reticulum, plasma membrane, plastid, vacuole	32.14	41.77
TraesCS2A01G052500.1	Wheat	plasma membrane	41.97	40.07
TraesCS4A01G018500.1	Wheat	peroxisome, plasma membrane, vacuole	31.0	38.05
TraesCS4A01G018400.1	Wheat	peroxisome, plasma membrane, vacuole	30.43	37.35
TraesCS4A01G018300.1	Wheat	peroxisome, plasma membrane, vacuole	27.41	35.71
TraesCS5A01G081500.1	Wheat	plasma membrane	39.13	34.67
TraesCS4A01G240700.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	25.52	29.87
TraesCS6A01G254100.1	Wheat	plasma membrane	20.6	25.89
TraesCS2A01G403800.1	Wheat	endoplasmic reticulum, plasma membrane, plastid, vacuole	20.04	25.06
TraesCS5A01G472600.1	Wheat	plasma membrane	19.85	24.71
TraesCS5A01G472500.1	Wheat	plasma membrane	19.66	24.7
TraesCS2A01G279700.1	Wheat	plasma membrane	18.9	23.81
TraesCS5A01G176900.1	Wheat	plasma membrane	18.34	23.04
TraesCS2A01G279600.1	Wheat	plasma membrane	0.38	0.56

Protein Annotations

EnsemblPlants:TraesCS6A01G348400.1	EnsemblPlantsGene:TraesCS6A01G348400	InterPro:AA_transpt_TM	PANTHER:PTHR22950	PANTHER:PTHR22950:SF358	PFAM:PF01490
SEG:seg	TMHMM:TMhelix	MapMan:24.2.3.4.7	:	:	:

Description

No Description!

Coordinates

chr6A:-:580533267..580537934

Molecular Weight (calculated)

57551.7 Da

IEP (calculated)

4.822

GRAVY (calculated)

0.436

Length

529 amino acids

Sequence
(BLAST)

001: MAAARHRKEE EDEMLLDDGD IEESPRDSFR DSDDDEAEED GRGEDGDGIG SFESHQWPQS YRETTDTYTI AASPIFGYLG PSTSKYSIDG GRSGLASDIK
101: LPFISDKLES VKSLRRHLLG SVRDEKLSFQ YTGEIYVGQG CSVTQTVFNG INVLAGVGLL SAPFTIHEAG WAGLAVLSVF AIICCYTGVL LKHCFESKDG
201: IATYPDIGEA AFGRIGRLII SIILYTELYS YCVEFIILEG DNMTSIFPDV NINLFGIHVD SKHFFGVLTA LVVLPTVWLR DLRVLSYLSA GGVIATLVVF
301: ISVTLVGTTE GVGFHQTGEA VKWSGMPFAI GIYGFCYSGH SVFPNIYQSM SDRTKFPKAL FICFVICTAI YGSFAIIGYL MFGDKTLSQI TLNLPKESFA
401: SKVALWTTVI NPFTKFALLL NPLARSLEEL RPEGFLNETI VSIILRTSLV ASTVVIAFVL PFFGLVMALI GSLLSILVAV IMPALCFLKI TQNKATRTQV
501: IASVAIIVVG VVSAALGTYS SLASIIGYY

Best Arabidopsis Sequence Match ( AT2G41190.1 )
(BLAST)

001: MEDKNNDKEK KTDVTFEDDE DNEDLEDNSS KYENDSETDQ SDLGDLPGDA VDRDDDIDEP FISQVQWPQS FRETTDSYTI AASPIFGSLR SNPPSFYRAS
101: RSNLDVESKA PLLPERHDDS DKASATQSAW SHKGSFAEEL PIGGYGCSVI QTIFNAINVM AGVGLLSTPY TVKEAGWASM VILLLFAVIC CYTATLMKDC
201: FENKTGIITY PDIGEAAFGK YGRILICMLL YTELYSYCVE FIILEGDNLT GLFPGTSLDL LGFRLDSKHL FGILTALIVL PTVWLKDLRI ISYLSAGGVI
301: ATALIAVSVF FLGTTGGIGF HHTGQAVKWN GIPFAIGIYG FCYSGHSVFP NIYQSMADKT KFNKAVITCF IICVLLYGGV AIMGYLMFGE ATLSQITLNM
401: PQDQFFSKVA QWTTVVSPFT KYALLMNPLA RSIEELLPER MSENIWCFLL LRTALVASSV CSAFLIPFFG LMMALIGSLL SILVAIIMPA LCFIKIMGNK
501: ATRTQMILSS IIVAIGVVSG TLGTYSSVAK IIRNYQ

Arabidopsis Description

AVT1AAmino acid transporter AVT1A [Source:UniProtKB/Swiss-Prot;Acc:O80668]
SUBAcon: [cytosol,plasma membrane,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.