Factsheet for TraesCS6A01G348300.2

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, vacuole, cytosol

Predictor Summary:

mitochondrion 2
cytosol 1
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, vacuole
Any Predictor:	cytosol, mitochondrion, plasma membrane, vacuole
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G331300.1	Wheat	plasma membrane	95.81	88.74
TraesCS6A01G348400.1	Wheat	cytosol, peroxisome, plasma membrane	88.47	79.77
TraesCS6B01G381900.1	Wheat	plasma membrane	80.5	75.15
HORVU6Hr1G083720.2	Barley	plastid	88.89	72.85
Zm00001d052063_P003	Maize	plasma membrane	76.52	67.59
Zm00001d018336_P002	Maize	plasma membrane	77.36	67.46
EES07655	Sorghum	plasma membrane	77.36	66.97
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plasma membrane	65.41	57.78
Os02t0788800-01	Rice	cytosol, peroxisome, plasma membrane	38.16	56.35
PGSC0003DMT400080507	Potato	peroxisome	60.17	54.88
Bra000217.1-P	Field mustard	plasma membrane	59.54	54.62
CDY35425	Canola	plasma membrane	59.54	54.62
CDY22507	Canola	plasma membrane	59.12	54.23
Bra004605.1-P	Field mustard	cytosol, nucleus, plasma membrane	59.75	53.88
CDX79951	Canola	cytosol, nucleus, plasma membrane	59.75	53.88
CDY23868	Canola	cytosol, nucleus, plasma membrane	59.75	53.88
AT2G41190.1	Thale cress	cytosol, peroxisome, plasma membrane	60.17	53.54
CDY06942	Canola	cytosol, peroxisome, plasma membrane	59.75	53.37
Bra016949.1-P	Field mustard	cytosol, peroxisome, plasma membrane	59.54	53.18
Solyc03g078150.2.1	Tomato	peroxisome	58.49	53.14
CDY67831	Canola	cytosol, peroxisome, plasma membrane	59.33	53.1
VIT_08s0007g05210.t01	Wine grape	plasma membrane	56.18	51.84
KRH16006	Soybean	cytosol	36.69	51.32
KRH33027	Soybean	plasma membrane	58.91	48.2
KRG95106	Soybean	cytosol, peroxisome, plasma membrane	45.7	47.39
KRH71933	Soybean	cytosol, peroxisome, plasma membrane	43.82	46.86
KRH66774	Soybean	plasma membrane	25.58	45.69
KRH77523	Soybean	cytosol, nucleus, plasma membrane	42.56	42.92
TraesCS7A01G188100.1	Wheat	plasma membrane	35.43	42.36
TraesCS2A01G339100.1	Wheat	plasma membrane	36.9	41.41
TraesCS2A01G338600.1	Wheat	plasma membrane	37.95	41.14
TraesCS2A01G282000.1	Wheat	endoplasmic reticulum, plasma membrane, plastid, vacuole	34.17	40.05
TraesCS2A01G338800.1	Wheat	plasma membrane	37.32	39.82
TraesCS2A01G052500.1	Wheat	plasma membrane	44.03	37.91
TraesCS6A01G002400.1	Wheat	cytosol, nucleus, plasma membrane	44.86	37.81
TraesCS4A01G018500.1	Wheat	peroxisome, plasma membrane, vacuole	32.91	36.43
TraesCS4A01G018400.1	Wheat	peroxisome, plasma membrane, vacuole	32.7	36.19
TraesCS4A01G018300.1	Wheat	peroxisome, plasma membrane, vacuole	29.14	34.24
TraesCS5A01G081500.1	Wheat	plasma membrane	41.09	32.83
TraesCS4A01G240700.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	28.72	30.31
TraesCS6A01G254100.1	Wheat	plasma membrane	21.8	24.7
TraesCS5A01G472500.1	Wheat	plasma membrane	21.38	24.23
TraesCS2A01G403800.1	Wheat	endoplasmic reticulum, plasma membrane, plastid, vacuole	21.17	23.88
TraesCS5A01G472600.1	Wheat	plasma membrane	21.17	23.76
TraesCS2A01G279700.1	Wheat	plasma membrane	19.92	22.62
TraesCS5A01G176900.1	Wheat	plasma membrane	19.29	21.85
TraesCS2A01G279600.1	Wheat	plasma membrane	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS6A01G348300.2	EnsemblPlantsGene:TraesCS6A01G348300	InterPro:AA_transpt_TM	ncoils:Coil	PANTHER:PTHR22950	PANTHER:PTHR22950:SF358
PFAM:PF01490	SEG:seg	TMHMM:TMhelix	MapMan:24.2.3.4.7	:	:

Description

No Description!

Coordinates

chr6A:-:580316422..580320256

Molecular Weight (calculated)

51879.9 Da

IEP (calculated)

6.605

GRAVY (calculated)

0.678

Length

477 amino acids

Sequence
(BLAST)

001: MAKAWCLFCR ETTDTYTIAV SPILGYLGPS MSKYSIDGGR SGLASDLNLP FILDKLEPVE SPRRHLLGSV QDEDPSFQYT KEIDARQGCS VTQTVFNGIN
101: VLAGVGLLST PSTIHEAGWA GLAVLSVFAI ICCYTGVLLK HCFESKDGIS TYPDIGEAAF GKIGRLIISI ILYTELYSYC VEFIILEGDN ITSIFPDINL
201: NLFGIHVDGR HFFGMLTALV VLPTVWLRDL QVLSFLSAGG IIATLVVFVS VALVGTTEGV GFHPTGEAVK WSGMPFAIGV YGFCYCGHSV FPNIYQSMSD
301: RTKFTKALFI WFTICTTIYG SFAIIGYLMF GDKTLSQITL NLPKESFASK VALWTTVINP FTKFALLLNP VARSLEELRP EGFLNETICF IILRTSLVAS
401: TVVIAFLLPF FGLVMALIGS LLSILVAVIM PALCFLKIAQ NKATRTQVIA SVSIIVVGVI SAALRTYSSV ASIIGYY

Best Arabidopsis Sequence Match ( AT2G39130.1 )
(BLAST)

001: MNHVPSDQSF YIESEDEDDR KDYVEEDGGS HSDSSDDVYD ENQAHIKPSS YTTAWPQSYR QSIDLYSSVP SPGIGFLGNN SMTRFGSSFL SSGLIRRHTP
101: ESLPTVTKPL LEEQADEQAL PKHRLSSQGL LSPIPSRRGS MRKDEKSSMV SHEIPMSRNS SYGQAVLNGL NVLCGVGILS TPYAAKEGGW LGLMILFVYG
201: LLSFYTGILL RYCLDSESDL ETYPDIGQAA FGTTGRIFVS IVLYLELYAC CVEYIILESD NLSSLYPNAA LSIGGFQLDA RHLFALLTTL AVLPTVWLRD
301: LSVLSYISAG GVIASVLVVL CLFWIGLVDE VGIHSKGTTL NLSTLPVAIG LYGYCYSGHA VFPNIYTSMA KPSQYPAVLL TCFGICTLMY AGVAVMGYTM
401: FGESTQSQFT LNLPQDLIAT KIAVWTTVVN PFTKYALTIS PVAMSLEELI PSRHIRSHWY AIGIRTLLVF STLLVGLAIP FFGLVMSLIG SLLTMLVTLI
501: LPPACFLSIV RRKVTPTQMM LCVLIIIVGA ISSVIGSYSA LSKIVEKLTN

Arabidopsis Description

AVT1CAmino acid transporter AVT1C [Source:UniProtKB/Swiss-Prot;Acc:F4IUW3]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.