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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 1
  • plasma membrane 2
  • golgi 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra004605.1-P Field mustard cytosol, nucleus, plasma membrane 100.0 100.0
CDY23868 Canola cytosol, nucleus, plasma membrane 99.24 99.24
CDY35425 Canola plasma membrane 86.77 88.27
CDY22507 Canola plasma membrane 85.82 87.31
CDY06942 Canola cytosol, peroxisome, plasma membrane 86.96 86.14
CDY67831 Canola cytosol, peroxisome, plasma membrane 86.2 85.55
AT2G41190.1 Thale cress cytosol, peroxisome, plasma membrane 84.69 83.58
PGSC0003DMT400080507 Potato peroxisome 59.17 59.85
TraesCS6A01G348300.2 Wheat cytosol, plasma membrane, vacuole 53.88 59.75
Solyc03g078150.2.1 Tomato peroxisome 59.17 59.62
VIT_08s0007g05210.t01 Wine grape plasma membrane 57.47 58.8
TraesCS6A01G348400.1 Wheat cytosol, peroxisome, plasma membrane 57.47 57.47
TraesCS6D01G331300.1 Wheat plasma membrane 55.77 57.28
GSMUA_Achr11P... Banana cytosol, peroxisome, plasma membrane 58.41 57.22
KRH16006 Soybean cytosol 36.48 56.6
TraesCS6D01G331400.2 Wheat cytosol, peroxisome, plasma membrane 57.28 56.42
TraesCS6B01G382000.2 Wheat cytosol, peroxisome, plasma membrane 57.28 56.32
Zm00001d052063_P003 Maize plasma membrane 56.71 55.56
Zm00001d018336_P002 Maize plasma membrane 57.28 55.39
EES07657 Sorghum plasma membrane 54.25 54.98
EES07655 Sorghum plasma membrane 57.09 54.81
TraesCS6B01G381900.1 Wheat plasma membrane 52.55 54.4
KRG95106 Soybean cytosol, peroxisome, plasma membrane 46.31 53.26
KRH77523 Soybean cytosol, nucleus, plasma membrane 47.45 53.07
Zm00001d018340_P001 Maize cytosol, peroxisome, plasma membrane 52.74 52.84
HORVU6Hr1G083720.2 Barley plastid 57.28 52.06
KRH66774 Soybean plasma membrane 24.39 48.31
Os02t0788800-01 Rice cytosol, peroxisome, plasma membrane 29.3 47.99
CDY18351 Canola plastid 41.02 42.63
CDX73974 Canola cytosol, nucleus, plasma membrane 32.14 41.56
CDX78269 Canola plasma membrane 41.59 41.51
CDY40336 Canola plasma membrane 42.91 41.5
CDX73443 Canola cytosol, nucleus, plasma membrane 41.97 41.34
CDY10463 Canola plasma membrane 42.53 41.21
CDY55126 Canola plasma membrane 39.7 40.86
CDY44630 Canola plasma membrane 42.34 40.8
CDY07919 Canola cytosol, nucleus, plasma membrane 40.64 40.72
CDX93284 Canola cytosol, nucleus, plasma membrane 41.78 40.48
CDX74865 Canola plasma membrane 42.16 40.4
CDY44419 Canola plasma membrane 30.06 39.26
CDX80808 Canola plasma membrane 18.71 39.13
CDX91000 Canola plasma membrane 31.76 39.07
CDX85556 Canola plasma membrane 31.57 38.93
CDX86397 Canola plasma membrane 29.49 38.52
CDX85233 Canola plasma membrane 29.49 38.52
CDX80809 Canola plasma membrane 38.94 34.74
CDY55127 Canola cytosol, plasma membrane, plastid 38.19 34.59
CDX73972 Canola extracellular, plastid 8.51 34.35
CDY38090 Canola plasma membrane 23.25 28.41
CDY04048 Canola plasma membrane 30.25 27.59
CDY70145 Canola plasma membrane 20.42 26.8
CDY21456 Canola plasma membrane 20.04 26.3
CDY59097 Canola plastid 19.85 23.7
CDY01068 Canola plasma membrane 18.71 23.63
CDY08487 Canola plasma membrane 18.53 23.5
CDY54797 Canola plastid 19.66 23.37
CDY53922 Canola plasma membrane 18.53 23.0
CDX73848 Canola plasma membrane 18.53 23.0
CDY42861 Canola peroxisome 18.53 22.9
CDY47026 Canola peroxisome, plastid 18.53 22.74
CDX85489 Canola vacuole 17.39 21.3
Protein Annotations
EnsemblPlants:CDX79951EnsemblPlantsGene:GSBRNA2T00132812001GO:A0A078CS13InterPro:AA_transpt_TMPANTHER:PTHR22950PANTHER:PTHR22950:SF358
PFAM:PF01490ProteinID:CDX79951ProteinID:CDX79951.1SEG:segTMHMM:TMhelixUniParc:UPI0002547683
MapMan:24.2.3.4.7:::::
Description
BnaA05g02050D
Coordinates
chrLK031819:+:1001234..1004053
Molecular Weight (calculated)
57980.2 Da
IEP (calculated)
4.661
GRAVY (calculated)
0.354
Length
529 amino acids
Sequence
(BLAST)
001: MEKKPEFTFD DDEDSSKYEN DSETDRSDVA DLPGDDDNNN NDEDTFVSQV QWPQSFRETT DSYTIAASPI FGSLRSNPSF YNTSQKPSFY RQSRSNLDVE
101: SKAPFLPERN EESDKASAAQ SVWSRRGSFA EELAIGGYGC SLTQTIFNAI NVMAGVGLLS TPYTLKESGW AGMVILVLFA VICCYTATLM KECFENKTGI
201: ITYPDIGEAA FGISGRILIC VLLYTELYSY CVEFIILEGD NLTGLFPGTS LDWLGIHIDS QHLFGILTAL IVLPTVWLKD LRIISYLSAG GVLASVLIAL
301: STFFLGATSG IGFHHTGHAV KWNGVPFAIG IYGFCYSGHS VFPNIYQSMA DKTKFTKAVI ITFALCVLLY GGVGIMGYLM FGEATLSQIT LNMPKDLFFS
401: KVAQWTTVAS PFTKFALLMN PLARGIEELL PEGMPENIWC FLLLRTALVA SSVCAAFLIP FFGLVMALIG SILSILVAII MPALCFMRIM GNKATRTQII
501: LSWIIVAIGL VSGTLGTYSS VAKIIKNYE
Best Arabidopsis Sequence Match ( AT2G39130.1 )
(BLAST)
001: MNHVPSDQSF YIESEDEDDR KDYVEEDGGS HSDSSDDVYD ENQAHIKPSS YTTAWPQSYR QSIDLYSSVP SPGIGFLGNN SMTRFGSSFL SSGLIRRHTP
101: ESLPTVTKPL LEEQADEQAL PKHRLSSQGL LSPIPSRRGS MRKDEKSSMV SHEIPMSRNS SYGQAVLNGL NVLCGVGILS TPYAAKEGGW LGLMILFVYG
201: LLSFYTGILL RYCLDSESDL ETYPDIGQAA FGTTGRIFVS IVLYLELYAC CVEYIILESD NLSSLYPNAA LSIGGFQLDA RHLFALLTTL AVLPTVWLRD
301: LSVLSYISAG GVIASVLVVL CLFWIGLVDE VGIHSKGTTL NLSTLPVAIG LYGYCYSGHA VFPNIYTSMA KPSQYPAVLL TCFGICTLMY AGVAVMGYTM
401: FGESTQSQFT LNLPQDLIAT KIAVWTTVVN PFTKYALTIS PVAMSLEELI PSRHIRSHWY AIGIRTLLVF STLLVGLAIP FFGLVMSLIG SLLTMLVTLI
501: LPPACFLSIV RRKVTPTQMM LCVLIIIVGA ISSVIGSYSA LSKIVEKLTN
Arabidopsis Description
AVT1CAmino acid transporter AVT1C [Source:UniProtKB/Swiss-Prot;Acc:F4IUW3]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.