CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular

Predictor Summary:

plastid 3
extracellular 4
endoplasmic reticulum 3
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plastid
Any Predictor:	endoplasmic reticulum, extracellular, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07919	Canola	cytosol, nucleus, plasma membrane	95.42	23.67
CDX80808	Canola	plasma membrane	40.46	20.95
CDY55126	Canola	plasma membrane	65.65	16.73
CDY40336	Canola	plasma membrane	65.65	15.72
CDY10463	Canola	plasma membrane	63.36	15.2
CDY55127	Canola	cytosol, plasma membrane, plastid	67.18	15.07
CDX80809	Canola	plasma membrane	64.89	14.33
CDY18351	Canola	plastid	43.51	11.2
CDX85556	Canola	plasma membrane	34.35	10.49
CDX91000	Canola	plasma membrane	34.35	10.47
CDX78269	Canola	plasma membrane	41.98	10.38
CDX74865	Canola	plasma membrane	43.51	10.33
CDY44630	Canola	plasma membrane	42.75	10.2
CDX93284	Canola	cytosol, nucleus, plasma membrane	41.98	10.07
CDX73443	Canola	cytosol, nucleus, plasma membrane	41.22	10.06
CDY38090	Canola	plasma membrane	31.3	9.47
CDY44419	Canola	plasma membrane	29.01	9.38
CDX86397	Canola	plasma membrane	28.24	9.14
CDX85233	Canola	plasma membrane	28.24	9.14
CDY22507	Canola	plasma membrane	35.88	9.04
CDY35425	Canola	plasma membrane	35.88	9.04
CDY67831	Canola	cytosol, peroxisome, plasma membrane	36.64	9.01
CDY06942	Canola	cytosol, peroxisome, plasma membrane	36.64	8.99
CDX79951	Canola	cytosol, nucleus, plasma membrane	34.35	8.51
CDY23868	Canola	cytosol, nucleus, plasma membrane	34.35	8.51
CDX73848	Canola	plasma membrane	26.72	8.22
CDY53922	Canola	plasma membrane	26.72	8.22
CDY42861	Canola	peroxisome	26.72	8.18
CDY47026	Canola	peroxisome, plastid	26.72	8.12
CDY21456	Canola	plasma membrane	24.43	7.94
CDY70145	Canola	plasma membrane	24.43	7.94
CDY08487	Canola	plasma membrane	23.66	7.43
CDY01068	Canola	plasma membrane	23.66	7.4
CDY59097	Canola	plastid	23.66	7.0
CDY54797	Canola	plastid	23.66	6.97
CDY04048	Canola	plasma membrane	29.77	6.72
CDX85489	Canola	vacuole	21.37	6.48
CDX73974	Canola	cytosol, nucleus, plasma membrane	5.34	1.71
KRH27948	Soybean	plasma membrane	0.0	0.0

Protein Annotations

EnsemblPlants:CDX73972	EnsemblPlantsGene:GSBRNA2T00111704001	GO:A0A078CAU3	InterPro:AA_transpt_TM	PANTHER:PTHR22950	PANTHER:PTHR22950:SF313
PFAM:PF01490	ProteinID:CDX73972	ProteinID:CDX73972.1	TMHMM:TMhelix	UniParc:UPI0004EB4002	MapMan:35.1

Description

BnaA03g30750D

Coordinates

chrLK031800:-:760517..761214

Molecular Weight (calculated)

14001.1 Da

IEP (calculated)

9.064

GRAVY (calculated)

1.153

Length

131 amino acids

Sequence
(BLAST)

001: MTGSIALQVI TPMTKYALTL TPIVLSLEEL MPSSEKMRSN GVSMFLRTIL VLSTLVVALA FPFFAIMGAL MGSFLSMLLA FILPCLCYLS ILRGRLSKIQ
101: MGVCVLIIIA GIVSGCCGTY SAIGKLVGER S

Best Arabidopsis Sequence Match ( AT3G09330.1 )
(BLAST)

001: MELEEQERDI LFPTDDEECQ VDVSCDDEDD DSSSYSSLSQ NDSAPWPRSY RQSVDILTGV TPPTISFIHR RSSQTSFTSS VASLYKRRPT SIANSFASST
101: SKQPLLSEKD DVLFLSSQIG LSNTDLSYGE PNFCSFPQSV LNGINVLCGI SLLTMPYAVK EGGWLGLCIL LSFAIITCYT GILLKRCLES SSDLRTYPDI
201: GQAAFGFTGR LIISILLYME LYVCCVEYII MMSDNLSRVF PNITLNIVGV SLDSPQIFAI SATLIVLPTV WLKDLSLLSY LSAGGVFVSI LLALCLFWVG
301: SVDGVGFHTG GKSLDLANLP VAIGIFGFGF SGHAVLPSIY SSMKEPSKFP LVLLISFGFC VFFYIVVAIC GYSMFGEAIQ SQFTLNMPQQ YTASKIAVWT
401: AVVVPMTKYA LALTPIVLGL EELMLPSEKM RSYGVSIFIK TILVLSTLVV ALTFPFFAIM GALMGSFLAM LVDFIFPCLC YLSILKGRLS KTQIGICVFI
501: IISGIVSGCC GTYSAIGRLV GKLD

Arabidopsis Description

AVT1GAmino acid transporter AVT1G [Source:UniProtKB/Swiss-Prot;Acc:Q1PER9]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.