Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- peroxisome 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G65990.1 | CDX84933 | AT1G27300.1 | 21798944 |
| AT5G65990.1 | CDY03907 | AT1G27300.1 | 21798944 |
| AT5G65990.1 | CDY15722 | AT1G27300.1 | 21798944 |
| AT5G65990.1 | CDY27605 | AT1G27300.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY42861 | Canola | peroxisome | 97.91 | 98.6 |
| Bra029326.1-P | Field mustard | peroxisome | 97.68 | 98.36 |
| AT5G65990.1 | Thale cress | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 88.86 | 89.7 |
| VIT_07s0031g02140.t01 | Wine grape | plasma membrane | 66.13 | 67.54 |
| CDY70145 | Canola | plasma membrane | 62.18 | 66.5 |
| CDY21456 | Canola | plasma membrane | 61.95 | 66.25 |
| PGSC0003DMT400045065 | Potato | plasma membrane, plastid | 63.81 | 65.32 |
| PGSC0003DMT400086252 | Potato | plasma membrane | 64.27 | 65.18 |
| Solyc02g082510.1.1 | Tomato | plasma membrane | 64.04 | 64.94 |
| Solyc03g032090.1.1 | Tomato | plasma membrane | 63.11 | 63.7 |
| PGSC0003DMT400048045 | Potato | plasma membrane | 62.65 | 63.23 |
| KRH28932 | Soybean | cytosol, plasma membrane | 51.74 | 61.94 |
| CDY54797 | Canola | plastid | 63.57 | 61.57 |
| CDY59097 | Canola | plastid | 63.11 | 61.4 |
| KRH39423 | Soybean | plasma membrane | 58.47 | 58.88 |
| PGSC0003DMT400094217 | Potato | plasma membrane | 57.31 | 58.53 |
| GSMUA_Achr1P02810_001 | Banana | cytosol, plasma membrane, vacuole | 52.2 | 57.11 |
| EES07473 | Sorghum | plasma membrane | 56.38 | 57.04 |
| GSMUA_Achr5P11060_001 | Banana | plasma membrane | 52.2 | 56.82 |
| Os04t0565500-01 | Rice | cytosol, plasma membrane, plastid | 55.92 | 56.71 |
| Zm00001d017557_P001 | Maize | plastid | 56.15 | 56.02 |
| Solyc02g082520.1.1 | Tomato | cytosol, peroxisome, plasma membrane | 54.29 | 55.85 |
| TraesCS2B01G421800.1 | Wheat | plasma membrane | 54.76 | 55.79 |
| TraesCS2D01G400900.1 | Wheat | plasma membrane | 54.76 | 55.79 |
| TraesCS2A01G403800.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid, vacuole | 54.29 | 55.32 |
| TraesCS6B01G271500.1 | Wheat | plasma membrane | 53.83 | 55.11 |
| GSMUA_Achr4P25490_001 | Banana | plasma membrane | 50.12 | 55.1 |
| TraesCS6A01G254100.1 | Wheat | plasma membrane | 53.6 | 54.87 |
| TraesCS6D01G235500.1 | Wheat | plasma membrane | 53.36 | 54.63 |
| HORVU6Hr1G064740.1 | Barley | plasma membrane | 53.13 | 54.39 |
| GSMUA_AchrUn_... | Banana | plasma membrane, plastid, vacuole | 52.44 | 54.07 |
| OQU82139 | Sorghum | peroxisome | 53.6 | 53.85 |
| Os02t0670900-02 | Rice | endoplasmic reticulum, plasma membrane, plastid | 56.15 | 49.69 |
| EES12671 | Sorghum | plastid | 56.38 | 48.99 |
| Zm00001d026121_P001 | Maize | cytosol, peroxisome, plasma membrane, plastid | 55.92 | 48.69 |
| CDY01068 | Canola | plasma membrane | 34.34 | 35.32 |
| CDY08487 | Canola | plasma membrane | 34.11 | 35.25 |
| CDY53922 | Canola | plasma membrane | 34.57 | 34.98 |
| CDX73848 | Canola | plasma membrane | 34.34 | 34.74 |
| CDX73972 | Canola | extracellular, plastid | 8.12 | 26.72 |
| CDX86397 | Canola | plasma membrane | 21.58 | 22.96 |
| CDY44419 | Canola | plasma membrane | 21.58 | 22.96 |
| CDX85233 | Canola | plasma membrane | 21.58 | 22.96 |
| CDX85556 | Canola | plasma membrane | 20.65 | 20.75 |
| CDX91000 | Canola | plasma membrane | 20.65 | 20.7 |
| CDY07919 | Canola | cytosol, nucleus, plasma membrane | 24.36 | 19.89 |
| CDY18351 | Canola | plastid | 23.2 | 19.65 |
| CDY55126 | Canola | plasma membrane | 22.97 | 19.26 |
| CDX78269 | Canola | plasma membrane | 23.67 | 19.25 |
| CDX73443 | Canola | cytosol, nucleus, plasma membrane | 23.9 | 19.18 |
| CDY23868 | Canola | cytosol, nucleus, plasma membrane | 22.97 | 18.71 |
| CDX93284 | Canola | cytosol, nucleus, plasma membrane | 23.67 | 18.68 |
| CDX74865 | Canola | plasma membrane | 23.9 | 18.66 |
| CDY44630 | Canola | plasma membrane | 23.67 | 18.58 |
| CDX79951 | Canola | cytosol, nucleus, plasma membrane | 22.74 | 18.53 |
| CDY38090 | Canola | plasma membrane | 18.56 | 18.48 |
| CDY35425 | Canola | plasma membrane | 22.04 | 18.27 |
| CDY22507 | Canola | plasma membrane | 22.04 | 18.27 |
| CDY55127 | Canola | cytosol, plasma membrane, plastid | 24.36 | 17.98 |
| CDY67831 | Canola | cytosol, peroxisome, plasma membrane | 22.04 | 17.82 |
| CDY06942 | Canola | cytosol, peroxisome, plasma membrane | 22.04 | 17.79 |
| CDY40336 | Canola | plasma membrane | 22.27 | 17.55 |
| CDX80808 | Canola | plasma membrane | 10.21 | 17.39 |
| CDY10463 | Canola | plasma membrane | 21.81 | 17.22 |
| CDX80809 | Canola | plasma membrane | 23.67 | 17.2 |
| CDX73974 | Canola | cytosol, nucleus, plasma membrane | 16.24 | 17.11 |
| CDY04048 | Canola | plasma membrane | 21.11 | 15.69 |
| CDX85489 | Canola | vacuole | 15.31 | 15.28 |
Protein Annotations
| EnsemblPlants:CDY47026 | EnsemblPlantsGene:GSBRNA2T00086540001 | GO:A0A078IB28 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:AA_transpt_TM | PANTHER:PTHR22950 | PANTHER:PTHR22950:SF464 | PFAM:PF01490 | ProteinID:CDY47026 | ProteinID:CDY47026.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EEE2E5 | UniProt:A0A078IB28 | MapMan:24.2.3.4.4 | : |
Description
BnaC02g42110DBnaC02g42110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IB28]
Coordinates
chrLK032694:-:169538..171726
Molecular Weight (calculated)
46910.4 Da
IEP (calculated)
7.365
GRAVY (calculated)
0.783
Length
431 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLEYDQDSG SSTHSLPSLR SSTNSLYVPR EDTPLLGPRT LSSQPKTFAN VFIAIVGAGV LGLPYTFKKT GWLLGLLTLF FVSSLTFFCM MLLVRTRRKL
101: ESLPGFSSIT SFGDLGEAVC GPAGRLVVDV MLVLSQSGFC VSYLIFVATT MANLLSRGTE VILGLDPSSV YMWGCFPFQL GLNSIPTLTH LAPLSIFADV
201: VDVAATLVVM VQDVFIFVKK RPPLRVFGGF SVFFYGLGVA VYAFEGIGMV LPLELEAKYK DKFGRALGLA MGLISIMYGA FGLLGYMAYG DETKDIITTN
301: LGVGLVSTLV QLGLAINLFF TFPLMMHPVY EIIERRLCSS SYSIWVRWST VLVVTLVALL VPNFADFLSL VGSSVCVMLG FVLPSLFHLQ AFKEELSFAR
401: KVVDVVIFLI GVMIAVTGTW TAVIEIMTSK A
101: ESLPGFSSIT SFGDLGEAVC GPAGRLVVDV MLVLSQSGFC VSYLIFVATT MANLLSRGTE VILGLDPSSV YMWGCFPFQL GLNSIPTLTH LAPLSIFADV
201: VDVAATLVVM VQDVFIFVKK RPPLRVFGGF SVFFYGLGVA VYAFEGIGMV LPLELEAKYK DKFGRALGLA MGLISIMYGA FGLLGYMAYG DETKDIITTN
301: LGVGLVSTLV QLGLAINLFF TFPLMMHPVY EIIERRLCSS SYSIWVRWST VLVVTLVALL VPNFADFLSL VGSSVCVMLG FVLPSLFHLQ AFKEELSFAR
401: KVVDVVIFLI GVMIAVTGTW TAVIEIMTSK A
001: MRYDQEAGSS SHSLPSGSSS HSLPPTEDTP LLGPRTLSSQ PKTFANVFIA IVGAGVLGLP YTFKKTGWLL GLLTLLFVSS LTFFCMMLLV HTRRKLESLS
101: GFNSITSFGD LGESVCGPAG RLVVDVMLVL SQSGFCVSYL IFVATTMANL LSRGTEHILG LDAASIYLWG CFPFQLGLNS IPSLTHLAPL SIFADIVDVA
201: ATLVVMVQDV FIFLKRRPPL RVFGGVSVFF YGLGVAVYAF EGIGMVLPLE LEAKYKDKFG RALGLAMGLI SIMYGAFGLL GYMAYGEETK DIITTNLGTG
301: VVSTLVQLGL AINLFFTFPL MMQPVYEVVE RRLCSSRYSV WVRWATVLVV TLVALLVPNF ADFLSLVGSS VCVVLGFVLP SLFHLQAFKN ELSITRIVVD
401: VLVFLIGVMI AITGTWTAVH EILTSKA
101: GFNSITSFGD LGESVCGPAG RLVVDVMLVL SQSGFCVSYL IFVATTMANL LSRGTEHILG LDAASIYLWG CFPFQLGLNS IPSLTHLAPL SIFADIVDVA
201: ATLVVMVQDV FIFLKRRPPL RVFGGVSVFF YGLGVAVYAF EGIGMVLPLE LEAKYKDKFG RALGLAMGLI SIMYGAFGLL GYMAYGEETK DIITTNLGTG
301: VVSTLVQLGL AINLFFTFPL MMQPVYEVVE RRLCSSRYSV WVRWATVLVV TLVALLVPNF ADFLSLVGSS VCVVLGFVLP SLFHLQAFKN ELSITRIVVD
401: VLVFLIGVMI AITGTWTAVH EILTSKA
Arabidopsis Description
AVT3AAmino acid transporter AVT3A [Source:UniProtKB/Swiss-Prot;Acc:Q9FKY3]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane,peroxisome]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.