Factsheet for Solyc03g032090.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
plasma membrane 4
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	peroxisome, plastid, secretory
BaCelLo:	plastid
MultiLoc:	plasma membrane
Plant-mPloc:	golgi, plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc05g015640.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G65990.1	Solyc05g015640.2.1	AT1G27300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400048045	Potato	plasma membrane	96.96	96.96
Solyc02g082510.1.1	Tomato	plasma membrane	80.56	80.94
VIT_07s0031g02140.t01	Wine grape	plasma membrane	74.0	74.88
Solyc02g082520.1.1	Tomato	cytosol, peroxisome, plasma membrane	67.21	68.5
Bra029326.1-P	Field mustard	peroxisome	63.93	63.78
CDY42861	Canola	peroxisome	63.93	63.78
CDY47026	Canola	peroxisome, plastid	63.7	63.11
KRH28932	Soybean	cytosol, plasma membrane	52.69	62.5
AT5G65990.1	Thale cress	endoplasmic reticulum, peroxisome, plasma membrane, plastid	62.3	62.3
KRH39423	Soybean	plasma membrane	60.89	60.75
GSMUA_Achr1P02810_001	Banana	cytosol, plasma membrane, vacuole	55.5	60.15
Solyc10g048180.1.1	Tomato	plasma membrane	59.72	59.72
Os04t0565500-01	Rice	cytosol, plasma membrane, plastid	59.25	59.53
TraesCS6B01G271500.1	Wheat	plasma membrane	58.55	59.38
TraesCS6A01G254100.1	Wheat	plasma membrane	58.31	59.14
EES07473	Sorghum	plasma membrane	58.78	58.92
HORVU6Hr1G064740.1	Barley	plasma membrane	58.08	58.91
TraesCS6D01G235500.1	Wheat	plasma membrane	58.08	58.91
TraesCS2D01G400900.1	Wheat	plasma membrane	58.08	58.63
TraesCS2B01G421800.1	Wheat	plasma membrane	58.08	58.63
TraesCS2A01G403800.1	Wheat	endoplasmic reticulum, plasma membrane, plastid, vacuole	57.61	58.16
GSMUA_Achr5P11060_001	Banana	plasma membrane	53.86	58.08
Zm00001d017557_P001	Maize	plastid	58.31	57.64
GSMUA_Achr4P25490_001	Banana	plasma membrane	52.46	57.14
GSMUA_AchrUn_...	Banana	plasma membrane, plastid, vacuole	55.5	56.7
OQU82139	Sorghum	peroxisome	55.97	55.71
EES12671	Sorghum	plastid	59.72	51.41
Zm00001d026121_P001	Maize	cytosol, peroxisome, plasma membrane, plastid	59.02	50.91
Os02t0670900-02	Rice	endoplasmic reticulum, plasma membrane, plastid	57.14	50.1
Solyc06g061260.1.1	Tomato	plasma membrane	10.54	23.32
Solyc03g063040.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	6.56	22.76
Solyc03g063030.2.1	Tomato	plasma membrane	12.41	22.55
Solyc03g013160.2.1	Tomato	plasma membrane	22.01	22.07
Solyc05g053970.2.1	Tomato	plasma membrane	16.86	20.45
Solyc05g050440.2.1	Tomato	extracellular, plasma membrane, vacuole	7.96	19.88
Solyc10g084830.1.1	Tomato	cytosol, peroxisome, plasma membrane	24.36	19.66
Solyc06g061270.1.1	Tomato	cytosol, plasma membrane	9.6	19.52
Solyc03g078150.2.1	Tomato	peroxisome	22.95	18.67
Solyc11g008440.1.1	Tomato	cytosol, nucleus, plasma membrane	24.12	18.56
Solyc09g098380.1.1	Tomato	plasma membrane	18.97	18.33
Solyc03g013440.2.1	Tomato	plasma membrane	14.52	17.92
Solyc03g063050.1.1	Tomato	extracellular, plasma membrane	10.77	17.29

Protein Annotations

MapMan:24.2.3.4.4	InterPro:AA_transpt_TM	GO:GO:0003333	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0006810
GO:GO:0008150	GO:GO:0015171	GO:GO:0016020	GO:GO:0016021	UniProt:K4BFI0	PFAM:PF01490
PANTHER:PTHR22950	PANTHER:PTHR22950:SF464	EnsemblPlantsGene:Solyc03g032090.1	EnsemblPlants:Solyc03g032090.1.1	TMHMM:TMhelix	UniParc:UPI00027677F7

Description

No Description!

Coordinates

chr3:+:4609738..4611021

Molecular Weight (calculated)

46880.2 Da

IEP (calculated)

7.681

GRAVY (calculated)

0.766

Length

427 amino acids

Sequence
(BLAST)

001: MGFEKDKASS SSHVLQIPRE DTPLLSKNHQ HLSSPSKTFA NVFIAIVGAG VLGLPYTFKR TGWVMGALML FTVAFLTYHC MMLLVYSRRK IESHLKISQI
101: SSFGDLGFAV CGPIGRSAVD VMIVLSQAGF CISYLIFIAN TLAYCFNYSK TNPNPKVFGF PPKAVYIWSC FPFQLGLNSI PTLTLLAPLS IFADVVELGA
201: MGVVMVKDVM IYVKSSHVLE TFGGFSVFFY GLGVAVYAFE GVGMVLPLEA ETKDKAKFGK ILGFSMALIS LLYGAFGVLG YFAFGEDTKD IITTNLGQGL
301: LSSLVQIGLC INLFFTFPLM MNPVYEVVER RFCEGSYCVW IRWIMVLVVT FVALFVPNFA DFLSLVGSSV CIILGFVLPA LFHLIVFKDE LRWHGLACDG
401: AIIVVAAVFS VYGTYSSLLE ILFGAKE

Best Arabidopsis Sequence Match ( AT4G38250.1 )
(BLAST)

001: MGFQNEASSS SYTLKIPPPA REDSPLLGKG PPLSSQFKTF ANVFIAVVGA GVLGLPYAFK RTGWLMGVLL LVSVSVLTHH CMMLLVYTRR KLDSFNAGIS
101: KIGSFGDLGF AVCGSLGRIV VDLFIILSQA GFCVGYLIFI GTTLANLSDP ESPTSLRHQF TRLGSEFLGV SSKSLYIWGC FPFQLGLNSI KTLTHLAPLS
201: IFADIVDLGA MAVVIVEDSM IILKQRPDVV AFGGMSLFLY GMGVAVYSFE GVGMVLPLES EMKDKDKFGK VLALGMGFIS LIYIAFGILG YLAFGEDTMD
301: IITANLGAGL VSTVVQLGLC INLFFTFPLM MNPVFEIVER RFSRGMYSAW LRWVLVLAVT LVALFVPNFA DFLSLVGSST CCVLGFVLPA LFHLLVFKEE
401: MGWLQWSSDT AIVVLGVVLA VSGTWSSLSE IFSVKV

Arabidopsis Description

AVT3CAmino acid transporter AVT3C [Source:UniProtKB/Swiss-Prot;Acc:Q9SVG0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.