Factsheet for GSMUA_Achr4P25490_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P10230_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38250.1	GSMUA_Achr4P10230_001	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P02810_001	Banana	cytosol, plasma membrane, vacuole	76.28	75.89
GSMUA_AchrUn_...	Banana	plasma membrane, plastid, vacuole	77.55	72.73
GSMUA_Achr5P11060_001	Banana	plasma membrane	72.45	71.72
TraesCS6D01G235500.1	Wheat	plasma membrane	64.54	60.09
TraesCS6B01G271500.1	Wheat	plasma membrane	64.54	60.09
TraesCS6A01G254100.1	Wheat	plasma membrane	64.29	59.86
HORVU6Hr1G064740.1	Barley	plasma membrane	63.78	59.38
Os04t0565500-01	Rice	cytosol, plasma membrane, plastid	63.01	58.12
EES07473	Sorghum	plasma membrane	63.01	57.98
OQU82139	Sorghum	peroxisome	63.27	57.81
TraesCS2D01G400900.1	Wheat	plasma membrane	62.24	57.68
TraesCS2B01G421800.1	Wheat	plasma membrane	62.24	57.68
TraesCS2A01G403800.1	Wheat	endoplasmic reticulum, plasma membrane, plastid, vacuole	62.24	57.68
Zm00001d017557_P001	Maize	plastid	63.27	57.41
CDY70145	Canola	plasma membrane	57.91	56.33
CDY21456	Canola	plasma membrane	57.4	55.83
VIT_07s0031g02140.t01	Wine grape	plasma membrane	59.95	55.69
Bra000591.1-P	Field mustard	plasma membrane	57.14	55.45
PGSC0003DMT400045065	Potato	plasma membrane, plastid	58.42	54.39
VIT_03s0038g03900.t01	Wine grape	plasma membrane	58.67	53.99
AT2G42005.1	Thale cress	plasma membrane	55.87	53.03
AT4G38250.1	Thale cress	plasma membrane	58.42	52.52
Solyc03g032090.1.1	Tomato	plasma membrane	57.14	52.46
PGSC0003DMT400048045	Potato	plasma membrane	57.14	52.46
EES12671	Sorghum	plastid	66.07	52.22
Solyc02g082510.1.1	Tomato	plasma membrane	56.12	51.76
PGSC0003DMT400086252	Potato	plasma membrane	56.12	51.76
AT5G65990.1	Thale cress	endoplasmic reticulum, peroxisome, plasma membrane, plastid	56.38	51.76
Zm00001d026121_P001	Maize	cytosol, peroxisome, plasma membrane, plastid	65.31	51.72
CDY59097	Canola	plastid	58.42	51.69
Os02t0670900-02	Rice	endoplasmic reticulum, plasma membrane, plastid	63.78	51.33
CDY54797	Canola	plastid	58.16	51.24
Bra029326.1-P	Field mustard	peroxisome	55.87	51.17
Bra033558.1-P	Field mustard	plasma membrane	46.68	51.12
PGSC0003DMT400094217	Potato	plasma membrane	54.85	50.95
CDY42861	Canola	peroxisome	55.61	50.93
KRH39423	Soybean	plasma membrane	55.1	50.47
CDY47026	Canola	peroxisome, plastid	55.1	50.12
Solyc02g082520.1.1	Tomato	cytosol, peroxisome, plasma membrane	52.3	48.93
Solyc10g048180.1.1	Tomato	plasma membrane	51.79	47.54
PGSC0003DMT400033422	Potato	plasma membrane	51.28	46.53
KRH28932	Soybean	cytosol, plasma membrane	42.35	46.11
GSMUA_Achr1P27880_001	Banana	nucleus, peroxisome, plasma membrane	24.49	27.51
GSMUA_Achr7P18140_001	Banana	plasma membrane	22.96	21.18
GSMUA_Achr10P...	Banana	plasma membrane	21.94	19.55
GSMUA_Achr6P35440_001	Banana	plasma membrane	21.43	19.31
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plasma membrane	25.26	18.33
GSMUA_Achr6P34060_001	Banana	plasma membrane	24.23	17.21
GSMUA_Achr1P03170_001	Banana	cytosol, nucleus, plasma membrane	23.98	16.7
GSMUA_Achr5P10650_001	Banana	cytosol, nucleus, plasma membrane	23.47	16.61
GSMUA_Achr6P06880_001	Banana	mitochondrion, plasma membrane, plastid	17.09	14.16

Protein Annotations

EnsemblPlants:GSMUA_Achr4P25490_001	EnsemblPlants:GSMUA_Achr4T25490_001	EnsemblPlantsGene:GSMUA_Achr4G25490_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:AA_transpt_TM	PANTHER:PTHR22950	PANTHER:PTHR22950:SF259	PFAM:PF01490	SEG:seg	TMHMM:TMhelix
UniParc:UPI0002948D3D	UniProt:M0SS10	MapMan:24.2.3.4.4	:	:	:

Description

Putative Proton-coupled amino acid transporter 3 [Source:GMGC_GENE;Acc:GSMUA_Achr4G25490_001]

Coordinates

chr4:+:24993316..24994575

Molecular Weight (calculated)

41494.9 Da

IEP (calculated)

4.457

GRAVY (calculated)

0.897

Length

392 amino acids

Sequence
(BLAST)

001: MSYGIDEDSP SYGRDATVPL LPSVAGSGYG ERQMSSQPKT FANVFIAIVG AGVLGLPYAF RQTGWAAGAL LLLAVAAFTF HCMILLIHTC RRVELDTFDI
101: IASFGDLGLA VAGPVGRLAV DVMIVLSQCG FCVGYLIFIS NTLTFLVPLS LPSLSSTAFY VLAMLPFQLG LNSIPTLTHL ALLSIFADIV DIGAMGVVIA
201: EDASILLSNP PPVRAFTGPS VLLYGIGVAV YAFEGVGMVI PLEAEAGDKA NFGNTLGFSM ALIAFTYGLF GVLGYAAFGE ETRDIITTNL GDGVAERWLH
301: GKSYCWWLRW AAVVAVSLVA TVVPNFGDFL SLVGSSVCVV LGFVLPAWFH LKVFREELGW ASTIADIAIV IAGLVLAIFS TWSSLVSIFS SV

Best Arabidopsis Sequence Match ( AT2G42005.1 )
(BLAST)

001: MGLEEQGRAR EDTPLLGKGR PLSSKFKTFA NVFIAIVGAG VLGLPYAFKR TGWLMGLLTL FSVAALINHC MMLLVHIRRK LGVSNIGSFG DLGFAACGNL
101: GRFVVDILII LSQAGFCVGY LIFIGNTLAN LSKPTKSTTL MSLRHLMGVS PKSLYIWGCF PFQLGLNSIK TLTHLAPLSI FADVVDLGAM AVVIVEDIKI
201: TVVQRPQVVA FGGMSVFFYG MGVAVYAFEG VGMVLPLESE TKDKDKFGKV LALSMLFIAV MYGSFGVLGY MAFGDDTMDI ITANLGAGVV SSLVQLGLCI
301: NLFFTFPLMM NPVFEIVERR FWSGMYCVWL RWLLVLAVTL VALLVPNFAD FLSLVGSSVC CALGFVLPSL FHLMVFKDEM EWKQRALDVG ILLLGVILGV
401: SGTWSSLTEI FQE

Arabidopsis Description

AVT3BAmino acid transporter AVT3B [Source:UniProtKB/Swiss-Prot;Acc:F4ILY9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.