Factsheet for GSMUA_Achr10P29730_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
peroxisome 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
PTS1:	peroxisome
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0026g02500.t01	Wine grape	plasma membrane	57.5	61.56
PGSC0003DMT400019843	Potato	peroxisome, plasma membrane, plastid, vacuole	20.45	60.0
Solyc05g053970.2.1	Tomato	plasma membrane	47.95	59.94
Solyc05g050440.2.1	Tomato	extracellular, plasma membrane, vacuole	22.27	57.31
Solyc06g061270.1.1	Tomato	cytosol, plasma membrane	27.05	56.67
Solyc06g061260.1.1	Tomato	plasma membrane	24.77	56.48
GSMUA_Achr7P18140_001	Banana	plasma membrane	51.82	53.65
KRG89633	Soybean	plasma membrane	48.86	52.83
GSMUA_Achr6P35440_001	Banana	plasma membrane	51.59	52.18
PGSC0003DMT400082135	Potato	plasma membrane	12.05	51.96
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plasma membrane	42.05	34.26
GSMUA_Achr5P10650_001	Banana	cytosol, nucleus, plasma membrane	40.23	31.95
GSMUA_Achr6P34060_001	Banana	plasma membrane	39.77	31.7
GSMUA_Achr1P03170_001	Banana	cytosol, nucleus, plasma membrane	38.41	30.02
GSMUA_Achr6P06880_001	Banana	mitochondrion, plasma membrane, plastid	31.14	28.96
GSMUA_Achr1P02810_001	Banana	cytosol, plasma membrane, vacuole	20.45	22.84
GSMUA_Achr5P11060_001	Banana	plasma membrane	20.23	22.47
GSMUA_Achr4P25490_001	Banana	plasma membrane	19.55	21.94
GSMUA_Achr1P27880_001	Banana	nucleus, peroxisome, plasma membrane	16.59	20.92
GSMUA_AchrUn_...	Banana	plasma membrane, plastid, vacuole	19.32	20.33

Protein Annotations

EnsemblPlants:GSMUA_Achr10P29730_001	EnsemblPlants:GSMUA_Achr10T29730_001	EnsemblPlantsGene:GSMUA_Achr10G29730_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:AA_transpt_TM	PANTHER:PTHR22950	PANTHER:PTHR22950:SF465	PFAM:PF01490	SEG:seg	TMHMM:TMhelix
UniParc:UPI000296F544	UniProt:M0RMJ7	MapMan:24.2.3.4.7	:	:	:

Description

Putative Vacuolar amino acid transporter 1 [Source:GMGC_GENE;Acc:GSMUA_Achr10G29730_001]

Coordinates

chr10:-:32130913..32133013

Molecular Weight (calculated)

47682.0 Da

IEP (calculated)

8.325

GRAVY (calculated)

0.771

Length

440 amino acids

Sequence
(BLAST)

001: MAVKPSISDP EAGTHAVSVV GDEGGPGVTV PLLRPYGHEI QYRKQRQESP QAGATFVRTC FNGLNALSGV GIVSIPYALS SGGWLSLVVL FMLAAICCYT
101: GLLLQRCMQR SPDIKTYPDI GEFAFGHKGR VAVSVFMYLE LYLVAIGFLI LQGDNLENLF PGASIRIAML NIAAKQLFVI LAALVVLPTT WMRSMGLLAY
201: VSAGGVLVSV IMVCSVLSAA TVEVGFHERG RLVNLSGLPT ALGLYAFCYC GHAVFPTLCT SMKDSTKFSK VLIVCFVLCT INYGSMAIIG YLMYGDNLKS
301: QVTLNLPIGN ISSKIAIYTT VVNPLTKYAL MVTPIANAIE ERLAEYHKSL EPCLTRTLLM LSMVTVALAI PFFGYLMAFI GSLLGVVVSI LLPCLCYLKI
401: FKPHCIHVVE LVIIFCILMM GCVMAVTGTY TSLREIYHKL

Best Arabidopsis Sequence Match ( AT3G28960.1 )
(BLAST)

001: MEEDNQEIQR DNVGSSSFFK TCFNALNALS GIGILSVPYS LARGGWLSLS LLLLLAVTAF YTSLLITKCM NADRNIKTYP DIGERAFGRP GRIIVSVFMH
101: LELYLVTTGF LILEGDNLHN LFPGFTIEMI GLRLNGKQAF MATVAFVIMP TLWWDNLSVL SYVSMSGVLA TTVTLGSISW IGAFDGIGFH QKGKLINWSG
201: IPTALSLYAF CYGAHPVLPT LYSSMKSKHQ FNNVLLICFI LCTIGYTSMA VLGYLMYGSQ TLSQITLNLP IHKTSSKVAI YTTLVNPVAK YALMITPTVN
301: TIKDWFPSRY SKKAYLHLLI STFFIISSVV IAETLPFFGY MMSLVGALLS VTVSILLPCL CYLKIFGNYK KIGCETIMLF GMVVMSVFVG VIGTYIALRD
401: IIGSV

Arabidopsis Description

AVT1IAmino acid transporter AVT1I [Source:UniProtKB/Swiss-Prot;Acc:F4J1Q9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.