Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, vacuole
Predictor Summary:
Predictor Summary:
- plastid 3
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr4P10230_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G38250.1 | GSMUA_Achr4P10230_001 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P02810_001 | Banana | cytosol, plasma membrane, vacuole | 79.43 | 84.26 |
| GSMUA_Achr5P11060_001 | Banana | plasma membrane | 76.79 | 81.06 |
| GSMUA_Achr4P25490_001 | Banana | plasma membrane | 72.73 | 77.55 |
| Os04t0565500-01 | Rice | cytosol, plasma membrane, plastid | 64.59 | 63.53 |
| HORVU6Hr1G064740.1 | Barley | plasma membrane | 63.88 | 63.42 |
| TraesCS2A01G403800.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid, vacuole | 64.11 | 63.36 |
| TraesCS2B01G421800.1 | Wheat | plasma membrane | 64.11 | 63.36 |
| TraesCS2D01G400900.1 | Wheat | plasma membrane | 64.11 | 63.36 |
| TraesCS6D01G235500.1 | Wheat | plasma membrane | 63.64 | 63.18 |
| TraesCS6B01G271500.1 | Wheat | plasma membrane | 63.64 | 63.18 |
| TraesCS6A01G254100.1 | Wheat | plasma membrane | 63.64 | 63.18 |
| OQU82139 | Sorghum | peroxisome | 63.4 | 61.77 |
| EES07473 | Sorghum | plasma membrane | 61.72 | 60.56 |
| Zm00001d017557_P001 | Maize | plastid | 62.44 | 60.42 |
| VIT_07s0031g02140.t01 | Wine grape | plasma membrane | 60.05 | 59.48 |
| CDY70145 | Canola | plasma membrane | 56.94 | 59.06 |
| Bra000591.1-P | Field mustard | plasma membrane | 56.7 | 58.66 |
| CDY21456 | Canola | plasma membrane | 56.46 | 58.56 |
| PGSC0003DMT400045065 | Potato | plasma membrane, plastid | 57.66 | 57.24 |
| AT2G42005.1 | Thale cress | plasma membrane | 55.5 | 56.17 |
| Solyc02g082510.1.1 | Tomato | plasma membrane | 56.94 | 56.0 |
| PGSC0003DMT400048045 | Potato | plasma membrane | 57.18 | 55.97 |
| EES12671 | Sorghum | plastid | 66.27 | 55.85 |
| VIT_03s0038g03900.t01 | Wine grape | plasma membrane | 56.7 | 55.63 |
| PGSC0003DMT400086252 | Potato | plasma membrane | 56.46 | 55.53 |
| Solyc03g032090.1.1 | Tomato | plasma membrane | 56.7 | 55.5 |
| Zm00001d026121_P001 | Maize | cytosol, peroxisome, plasma membrane, plastid | 65.55 | 55.35 |
| AT4G38250.1 | Thale cress | plasma membrane | 57.18 | 54.82 |
| Os02t0670900-02 | Rice | endoplasmic reticulum, plasma membrane, plastid | 63.64 | 54.62 |
| AT5G65990.1 | Thale cress | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 55.26 | 54.1 |
| PGSC0003DMT400094217 | Potato | plasma membrane | 54.31 | 53.79 |
| CDY59097 | Canola | plastid | 56.46 | 53.27 |
| Bra029326.1-P | Field mustard | peroxisome | 54.55 | 53.27 |
| CDY42861 | Canola | peroxisome | 54.55 | 53.27 |
| CDY54797 | Canola | plastid | 55.98 | 52.58 |
| CDY47026 | Canola | peroxisome, plastid | 54.07 | 52.44 |
| Solyc02g082520.1.1 | Tomato | cytosol, peroxisome, plasma membrane | 52.39 | 52.27 |
| Bra033558.1-P | Field mustard | plasma membrane | 44.74 | 52.23 |
| KRH39423 | Soybean | plasma membrane | 51.2 | 50.0 |
| Solyc10g048180.1.1 | Tomato | plasma membrane | 50.96 | 49.88 |
| KRH28932 | Soybean | cytosol, plasma membrane | 41.87 | 48.61 |
| PGSC0003DMT400033422 | Potato | plasma membrane | 49.76 | 48.15 |
| GSMUA_Achr1P27880_001 | Banana | nucleus, peroxisome, plasma membrane | 24.16 | 28.94 |
| GSMUA_Achr7P18140_001 | Banana | plasma membrane | 20.81 | 20.47 |
| GSMUA_Achr10P... | Banana | plasma membrane | 20.33 | 19.32 |
| GSMUA_Achr6P35440_001 | Banana | plasma membrane | 19.86 | 19.08 |
| GSMUA_Achr11P... | Banana | cytosol, peroxisome, plasma membrane | 22.97 | 17.78 |
| GSMUA_Achr6P34060_001 | Banana | plasma membrane | 22.25 | 16.85 |
| GSMUA_Achr1P03170_001 | Banana | cytosol, nucleus, plasma membrane | 21.77 | 16.16 |
| GSMUA_Achr5P10650_001 | Banana | cytosol, nucleus, plasma membrane | 21.05 | 15.88 |
| GSMUA_Achr6P06880_001 | Banana | mitochondrion, plasma membrane, plastid | 16.51 | 14.59 |
Protein Annotations
| EnsemblPlants:GSMUA_AchrUn_randomP08210_001 | EnsemblPlants:GSMUA_AchrUn_randomT08210_001 | EnsemblPlantsGene:GSMUA_AchrUn_randomG08210_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:AA_transpt_TM | PANTHER:PTHR22950 | PANTHER:PTHR22950:SF259 | PFAM:PF01490 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI0002950F6C | UniProt:M0U7D2 | MapMan:24.2.3.4.4 | : | : | : |
Description
Putative Proton-coupled amino acid transporter 3 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG08210_001]
Coordinates
chrchrUn_random:+:35236161..35239159
Molecular Weight (calculated)
44316.9 Da
IEP (calculated)
8.119
GRAVY (calculated)
0.842
Length
418 amino acids
Sequence
(BLAST)
(BLAST)
001: MRFSSEATSS GCGLDANAPL LPSVAGSDYH GRRLSSQPKT FANVFIAIVG AGVLGLPYAF RRTGWAAGAI LLLAVAALSF HCMMLLVRTR RQLNLEHSAK
101: IASFGDLGLA VAGPLGRLAV DAMIVLSQAG FCIGYLIFIS NSFTHLLPAS LTFLPFLSSN AIYVLTMLPF QLGLNSIQTL TLLAPLSIFA DVVDIGAMGV
201: VIAEDVSIML SSPPPLNAFS GPSVLLYGIG VAVYAFEGVG MVIPLEAEAA DKPKFGRTLG LSMAFIALLY GLFGVLGYAA FGEETRDIIT TNLGVAERWV
301: CGKRYCWWLR WAVVVAVSLV ATLVPNFADF LSLVGSSVCV VLGFVLPALF HLKVFGSELG WAGATVDIAI LIIGLTLAIS GTWSSLMTIF NSVQLDRVLI
401: RNGSIGIKLN QLFPLSRS
101: IASFGDLGLA VAGPLGRLAV DAMIVLSQAG FCIGYLIFIS NSFTHLLPAS LTFLPFLSSN AIYVLTMLPF QLGLNSIQTL TLLAPLSIFA DVVDIGAMGV
201: VIAEDVSIML SSPPPLNAFS GPSVLLYGIG VAVYAFEGVG MVIPLEAEAA DKPKFGRTLG LSMAFIALLY GLFGVLGYAA FGEETRDIIT TNLGVAERWV
301: CGKRYCWWLR WAVVVAVSLV ATLVPNFADF LSLVGSSVCV VLGFVLPALF HLKVFGSELG WAGATVDIAI LIIGLTLAIS GTWSSLMTIF NSVQLDRVLI
401: RNGSIGIKLN QLFPLSRS
001: MGLEEQGRAR EDTPLLGKGR PLSSKFKTFA NVFIAIVGAG VLGLPYAFKR TGWLMGLLTL FSVAALINHC MMLLVHIRRK LGVSNIGSFG DLGFAACGNL
101: GRFVVDILII LSQAGFCVGY LIFIGNTLAN LSKPTKSTTL MSLRHLMGVS PKSLYIWGCF PFQLGLNSIK TLTHLAPLSI FADVVDLGAM AVVIVEDIKI
201: TVVQRPQVVA FGGMSVFFYG MGVAVYAFEG VGMVLPLESE TKDKDKFGKV LALSMLFIAV MYGSFGVLGY MAFGDDTMDI ITANLGAGVV SSLVQLGLCI
301: NLFFTFPLMM NPVFEIVERR FWSGMYCVWL RWLLVLAVTL VALLVPNFAD FLSLVGSSVC CALGFVLPSL FHLMVFKDEM EWKQRALDVG ILLLGVILGV
401: SGTWSSLTEI FQE
101: GRFVVDILII LSQAGFCVGY LIFIGNTLAN LSKPTKSTTL MSLRHLMGVS PKSLYIWGCF PFQLGLNSIK TLTHLAPLSI FADVVDLGAM AVVIVEDIKI
201: TVVQRPQVVA FGGMSVFFYG MGVAVYAFEG VGMVLPLESE TKDKDKFGKV LALSMLFIAV MYGSFGVLGY MAFGDDTMDI ITANLGAGVV SSLVQLGLCI
301: NLFFTFPLMM NPVFEIVERR FWSGMYCVWL RWLLVLAVTL VALLVPNFAD FLSLVGSSVC CALGFVLPSL FHLMVFKDEM EWKQRALDVG ILLLGVILGV
401: SGTWSSLTEI FQE
Arabidopsis Description
AVT3BAmino acid transporter AVT3B [Source:UniProtKB/Swiss-Prot;Acc:F4ILY9]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.