Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra033558.1-P | Field mustard | plasma membrane | 75.0 | 91.34 |
| CDY59097 | Canola | plastid | 91.74 | 90.29 |
| CDY54797 | Canola | plastid | 91.74 | 89.89 |
| AT2G42005.1 | Thale cress | plasma membrane | 75.0 | 79.18 |
| VIT_03s0038g03900.t01 | Wine grape | plasma membrane | 69.04 | 70.66 |
| GSMUA_Achr1P02810_001 | Banana | cytosol, plasma membrane, vacuole | 57.11 | 63.2 |
| AT5G65990.1 | Thale cress | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 61.24 | 62.53 |
| GSMUA_Achr5P11060_001 | Banana | plasma membrane | 55.5 | 61.11 |
| Solyc10g048180.1.1 | Tomato | plasma membrane | 59.4 | 60.66 |
| TraesCS6B01G271500.1 | Wheat | plasma membrane | 58.49 | 60.57 |
| Os04t0565500-01 | Rice | cytosol, plasma membrane, plastid | 58.95 | 60.47 |
| TraesCS6A01G254100.1 | Wheat | plasma membrane | 58.26 | 60.33 |
| TraesCS6D01G235500.1 | Wheat | plasma membrane | 58.26 | 60.33 |
| HORVU6Hr1G064740.1 | Barley | plasma membrane | 58.03 | 60.09 |
| TraesCS2B01G421800.1 | Wheat | plasma membrane | 58.03 | 59.81 |
| TraesCS2D01G400900.1 | Wheat | plasma membrane | 58.03 | 59.81 |
| PGSC0003DMT400033422 | Potato | plasma membrane | 59.17 | 59.72 |
| TraesCS2A01G403800.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid, vacuole | 57.8 | 59.57 |
| EES07473 | Sorghum | plasma membrane | 57.11 | 58.45 |
| GSMUA_Achr4P25490_001 | Banana | plasma membrane | 52.52 | 58.42 |
| Zm00001d017557_P001 | Maize | plastid | 57.8 | 58.33 |
| GSMUA_AchrUn_... | Banana | plasma membrane, plastid, vacuole | 54.82 | 57.18 |
| OQU82139 | Sorghum | peroxisome | 56.19 | 57.11 |
| EES12671 | Sorghum | plastid | 59.4 | 52.22 |
| Os02t0670900-02 | Rice | endoplasmic reticulum, plasma membrane, plastid | 58.26 | 52.16 |
| Zm00001d026121_P001 | Maize | cytosol, peroxisome, plasma membrane, plastid | 58.72 | 51.72 |
| AT3G11900.2 | Thale cress | plasma membrane | 35.32 | 35.65 |
| AT5G16740.1 | Thale cress | plasma membrane | 22.71 | 23.24 |
| AT3G28960.2 | Thale cress | plasma membrane | 21.56 | 23.21 |
| AT5G15240.1 | Thale cress | plasma membrane | 21.1 | 21.75 |
| AT2G39130.2 | Thale cress | cytosol, nucleus, plasma membrane | 25.0 | 19.82 |
| AT3G09330.1 | Thale cress | cytosol, nucleus, plasma membrane | 23.39 | 19.47 |
| AT2G41190.1 | Thale cress | cytosol, peroxisome, plasma membrane | 23.85 | 19.4 |
| AT3G09340.1 | Thale cress | plasma membrane | 23.39 | 19.32 |
| AT5G02170.1 | Thale cress | plasma membrane | 22.94 | 19.01 |
| AT5G02180.1 | Thale cress | plasma membrane | 23.85 | 18.91 |
| AT3G54830.1 | Thale cress | nucleus | 22.25 | 17.77 |
Protein Annotations
| MapMan:24.2.3.4.4 | EntrezGene:829982 | InterPro:AA_transpt_TM | ProteinID:AEE86905.1 | ArrayExpress:AT4G38250 | EnsemblPlantsGene:AT4G38250 |
| RefSeq:AT4G38250 | TAIR:AT4G38250 | RefSeq:AT4G38250-TAIR-G | EnsemblPlants:AT4G38250.1 | TAIR:AT4G38250.1 | EMBL:AY050451 |
| EMBL:AY087791 | EMBL:AY133541 | Unigene:At.24305 | ProteinID:CAB37481.1 | ProteinID:CAB80490.1 | GO:GO:0003333 |
| GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005773 | GO:GO:0005774 | GO:GO:0006810 | GO:GO:0006865 | GO:GO:0008150 | GO:GO:0015171 |
| GO:GO:0015175 | GO:GO:0015804 | GO:GO:0016020 | GO:GO:0016021 | RefSeq:NP_195538.1 | PFAM:PF01490 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR22950 | PANTHER:PTHR22950:SF464 | UniProt:Q9SVG0 |
| TMHMM:TMhelix | UniParc:UPI00000A7D30 | SEG:seg | : | : | : |
Description
AVT3CAmino acid transporter AVT3C [Source:UniProtKB/Swiss-Prot;Acc:Q9SVG0]
Coordinates
chr4:+:17935402..17937068
Molecular Weight (calculated)
47213.7 Da
IEP (calculated)
6.658
GRAVY (calculated)
0.795
Length
436 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFQNEASSS SYTLKIPPPA REDSPLLGKG PPLSSQFKTF ANVFIAVVGA GVLGLPYAFK RTGWLMGVLL LVSVSVLTHH CMMLLVYTRR KLDSFNAGIS
101: KIGSFGDLGF AVCGSLGRIV VDLFIILSQA GFCVGYLIFI GTTLANLSDP ESPTSLRHQF TRLGSEFLGV SSKSLYIWGC FPFQLGLNSI KTLTHLAPLS
201: IFADIVDLGA MAVVIVEDSM IILKQRPDVV AFGGMSLFLY GMGVAVYSFE GVGMVLPLES EMKDKDKFGK VLALGMGFIS LIYIAFGILG YLAFGEDTMD
301: IITANLGAGL VSTVVQLGLC INLFFTFPLM MNPVFEIVER RFSRGMYSAW LRWVLVLAVT LVALFVPNFA DFLSLVGSST CCVLGFVLPA LFHLLVFKEE
401: MGWLQWSSDT AIVVLGVVLA VSGTWSSLSE IFSVKV
101: KIGSFGDLGF AVCGSLGRIV VDLFIILSQA GFCVGYLIFI GTTLANLSDP ESPTSLRHQF TRLGSEFLGV SSKSLYIWGC FPFQLGLNSI KTLTHLAPLS
201: IFADIVDLGA MAVVIVEDSM IILKQRPDVV AFGGMSLFLY GMGVAVYSFE GVGMVLPLES EMKDKDKFGK VLALGMGFIS LIYIAFGILG YLAFGEDTMD
301: IITANLGAGL VSTVVQLGLC INLFFTFPLM MNPVFEIVER RFSRGMYSAW LRWVLVLAVT LVALFVPNFA DFLSLVGSST CCVLGFVLPA LFHLLVFKEE
401: MGWLQWSSDT AIVVLGVVLA VSGTWSSLSE IFSVKV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.