Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- mitochondrion 1
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY55126 | Canola | plasma membrane | 85.74 | 87.74 |
| CDX80808 | Canola | plasma membrane | 36.69 | 76.28 |
| AT3G09330.1 | Thale cress | cytosol, nucleus, plasma membrane | 67.11 | 67.37 |
| AT3G09340.1 | Thale cress | plasma membrane | 66.35 | 66.1 |
| AT5G02180.1 | Thale cress | plasma membrane | 67.49 | 64.55 |
| HORVU2Hr1G075350.2 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 19.2 | 58.72 |
| HORVU4Hr1G022660.1 | Barley | extracellular | 23.0 | 54.75 |
| PGSC0003DMT400028760 | Potato | cytosol, peroxisome, plasma membrane | 50.95 | 50.66 |
| Solyc10g084830.1.1 | Tomato | cytosol, peroxisome, plasma membrane | 50.76 | 50.47 |
| AT2G39130.2 | Thale cress | cytosol, nucleus, plasma membrane | 49.62 | 47.45 |
| GSMUA_Achr6P34060_001 | Banana | plasma membrane | 48.48 | 46.2 |
| AT3G54830.1 | Thale cress | nucleus | 44.68 | 43.04 |
| AT2G41190.1 | Thale cress | cytosol, peroxisome, plasma membrane | 42.97 | 42.16 |
| EES17245 | Sorghum | cytosol, peroxisome, plasma membrane | 46.01 | 42.01 |
| Zm00001d032325_P001 | Maize | mitochondrion, plasma membrane, vacuole | 21.48 | 41.85 |
| HORVU5Hr1G020560.3 | Barley | plasma membrane | 44.87 | 39.86 |
| TraesCS5B01G084900.1 | Wheat | plasma membrane | 45.06 | 39.57 |
| TraesCS5D01G091100.1 | Wheat | plasma membrane | 44.68 | 39.43 |
| Os12t0574000-01 | Rice | plasma membrane | 44.3 | 39.23 |
| TraesCS5A01G081500.1 | Wheat | plasma membrane | 44.49 | 39.2 |
| AT5G15240.1 | Thale cress | plasma membrane | 30.61 | 38.06 |
| Zm00001d030751_P001 | Maize | plasma membrane | 45.63 | 37.97 |
| Zm00001d041534_P002 | Maize | plasma membrane | 43.54 | 37.6 |
| AT3G28960.2 | Thale cress | plasma membrane | 28.14 | 36.54 |
| Zm00001d031629_P001 | Maize | cytosol, plasma membrane, vacuole | 12.36 | 36.11 |
| AT5G16740.1 | Thale cress | plasma membrane | 27.95 | 34.51 |
| AT2G42005.1 | Thale cress | plasma membrane | 19.2 | 24.46 |
| AT4G38250.1 | Thale cress | plasma membrane | 19.01 | 22.94 |
| AT3G11900.2 | Thale cress | plasma membrane | 18.25 | 22.22 |
| AT5G65990.1 | Thale cress | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 17.87 | 22.01 |
Protein Annotations
| MapMan:24.2.3.4.7 | EntrezGene:831896 | InterPro:AA_transpt_TM | ProteinID:AED90439.1 | ArrayExpress:AT5G02170 | EnsemblPlantsGene:AT5G02170 |
| RefSeq:AT5G02170 | TAIR:AT5G02170 | RefSeq:AT5G02170-TAIR-G | EnsemblPlants:AT5G02170.1 | TAIR:AT5G02170.1 | EMBL:AY102114 |
| Unigene:At.33451 | EMBL:BT005813 | ProteinID:CAB82990.1 | GO:GO:0003333 | GO:GO:0003674 | GO:GO:0005215 |
| GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006865 | GO:GO:0008150 | GO:GO:0015171 | GO:GO:0016020 |
| GO:GO:0016021 | RefSeq:NP_195837.2 | PFAM:PF01490 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PANTHER:PTHR22950 | PANTHER:PTHR22950:SF313 | UniProt:Q8LPF4 | TMHMM:TMhelix | UniParc:UPI0000060D4F |
| SEG:seg | : | : | : | : | : |
Description
AVT1EAmino acid transporter AVT1E [Source:UniProtKB/Swiss-Prot;Acc:Q8LPF4]
Coordinates
chr5:+:427642..430695
Molecular Weight (calculated)
57541.4 Da
IEP (calculated)
6.243
GRAVY (calculated)
0.510
Length
526 amino acids
Sequence
(BLAST)
(BLAST)
001: MKQNETFDQE REDLYHTFDE EDEESQTESS VPSTPLSRNR SEDVPVPWPR SYRQSMDLLT GVTPPTSTSF VSSFRQRRQS SVFGSFTSSP SKQQLLIDKD
101: EIQSSVVSSI KSFLASHLQL SVPGDLLTPQ ENRSCTFSQS VLNGINVLCG VALLTMPYAV KEGGWLGLFI LFSFGIITFY TGILLKRCLE NSPGIHTYPD
201: IGQAAFGTTG RILVSILLYV ELYASCVEYI IMMSDNLSRM FPNTSLYING FSLDSTQVFA ITTTLIVLPT VWLKDLSLLS YLSAGGVISS ILLALCLFWA
301: GSVDGVGFHI SGQALDITNI PVAIGIYGFG FGSHSVFPNI YSSMKEPSKF PTVLLISFAF CTLFYIAVAV CGFTMFGDAI QSQFTLNMPP HFTSSKIAVW
401: TAVVTPMTKY ALTITPVMLS LEELIPSSSR KMRSKGVSML FRTILVLSTL VVALTVPFFA TVAALIGSFI AMLIALIFPC LCYISIMKGR LTNFQIGICI
501: LIVIIGIVSG CCGTYSAIAR LIGEMT
101: EIQSSVVSSI KSFLASHLQL SVPGDLLTPQ ENRSCTFSQS VLNGINVLCG VALLTMPYAV KEGGWLGLFI LFSFGIITFY TGILLKRCLE NSPGIHTYPD
201: IGQAAFGTTG RILVSILLYV ELYASCVEYI IMMSDNLSRM FPNTSLYING FSLDSTQVFA ITTTLIVLPT VWLKDLSLLS YLSAGGVISS ILLALCLFWA
301: GSVDGVGFHI SGQALDITNI PVAIGIYGFG FGSHSVFPNI YSSMKEPSKF PTVLLISFAF CTLFYIAVAV CGFTMFGDAI QSQFTLNMPP HFTSSKIAVW
401: TAVVTPMTKY ALTITPVMLS LEELIPSSSR KMRSKGVSML FRTILVLSTL VVALTVPFFA TVAALIGSFI AMLIALIFPC LCYISIMKGR LTNFQIGICI
501: LIVIIGIVSG CCGTYSAIAR LIGEMT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.