CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G075350.2	Barley	endoplasmic reticulum, plasma membrane, vacuole	25.17	84.3
Zm00001d030751_P001	Maize	plasma membrane	92.36	84.18
HORVU4Hr1G022660.1	Barley	extracellular	30.73	80.09
Zm00001d041534_P002	Maize	plasma membrane	83.33	78.82
TraesCS5A01G081500.1	Wheat	plasma membrane	78.99	76.21
TraesCS5D01G091100.1	Wheat	plasma membrane	78.82	76.17
TraesCS5B01G084900.1	Wheat	plasma membrane	79.17	76.13
HORVU5Hr1G020560.3	Barley	plasma membrane	77.95	75.84
Zm00001d032325_P001	Maize	mitochondrion, plasma membrane, vacuole	34.38	73.33
Os12t0574000-01	Rice	plasma membrane	75.35	73.06
GSMUA_Achr6P34060_001	Banana	plasma membrane	51.91	54.17
AT5G02170.1	Thale cress	plasma membrane	42.01	46.01
Solyc10g084830.1.1	Tomato	cytosol, peroxisome, plasma membrane	42.01	45.75
CDY55126	Canola	plasma membrane	40.8	45.72
CDY40336	Canola	plasma membrane	43.23	45.52
Bra009608.1-P	Field mustard	plasma membrane	43.06	45.34
EES06091	Sorghum	plasma membrane	45.31	45.31
PGSC0003DMT400028760	Potato	cytosol, peroxisome, plasma membrane	41.32	44.99
AT5G02180.1	Thale cress	plasma membrane	42.88	44.91
CDY07919	Canola	cytosol, nucleus, plasma membrane	40.97	44.7
Bra005712.1-P	Field mustard	plasma membrane	38.89	44.62
AT3G09340.1	Thale cress	plasma membrane	40.8	44.51
CDY10463	Canola	plasma membrane	42.19	44.51
Bra001315.1-P	Field mustard	cytosol, peroxisome, plasma membrane	40.62	44.32
AT3G09330.1	Thale cress	cytosol, nucleus, plasma membrane	40.28	44.27
EER89806	Sorghum	cytosol, nucleus, plasma membrane	43.4	43.78
CDX80808	Canola	plasma membrane	18.92	43.08
KXG19641	Sorghum	plasma membrane	29.51	42.61
CDY55127	Canola	cytosol, plasma membrane, plastid	40.62	40.07
KXG25873	Sorghum	plasma membrane	45.31	39.67
CDX80809	Canola	plasma membrane	40.62	39.46
EES07655	Sorghum	plasma membrane	37.33	39.02
EES10943	Sorghum	cytosol, peroxisome, plasma membrane	30.9	38.53
EES07657	Sorghum	plasma membrane	34.55	38.12
EES01014	Sorghum	plasma membrane	26.22	34.79
OQU87120	Sorghum	peroxisome, plasma membrane, vacuole	26.39	34.31
EER98235	Sorghum	plastid	18.23	24.42
EES07473	Sorghum	plasma membrane	17.36	23.47
EER93207	Sorghum	plasma membrane	16.32	22.07
OQU82139	Sorghum	peroxisome	16.32	21.91
EES12671	Sorghum	plastid	17.36	20.16

Protein Annotations

MapMan:24.2.3.4.7	EntrezGene:8068119	InterPro:AA_transpt_TM	UniProt:C5YQB6	EnsemblPlants:EES17245	ProteinID:EES17245
ProteinID:EES17245.1	GO:GO:0003333	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0015171	GO:GO:0016020	GO:GO:0016021	PFAM:PF01490	PANTHER:PTHR22950
PANTHER:PTHR22950:SF249	EnsemblPlantsGene:SORBI_3008G139500	TMHMM:TMhelix	UniParc:UPI0001A87FD7	RefSeq:XP_002443407.1	SEG:seg

Description

hypothetical protein

Coordinates

chr8:-:56930701..56934038

Molecular Weight (calculated)

61932.4 Da

IEP (calculated)

5.259

GRAVY (calculated)

0.368

Length

576 amino acids

Sequence
(BLAST)

001: MDRDEEMGHG DRSLLFIGDE DDDLGADRDG GSPPTSSSDE GSFSDRSDDE ARGGGGDDAP DDGQKGAWPQ SYRQSIDMMS AVPSPRVNTL MAASPSLTRF
101: GSSFLKAGSS FFLRKGDGSG LPLTRPLLPP SVSQLSQSSL HPQPVKQSTD SLAQPPRPPP GHEAELPERP SRACLKSDYI ELPPPASKCS RSQSIINGFN
201: VLCGVGILTT AYGIKEGGWL SLLLLPLLGG SSCYTGLLLK RCIDSSPNIE TYPDIGQVAF GLFGRIFVSV VLYLELYASC VEYITLLGDS LSSVFPSAHL
301: AFTGIELNAH NLFAITMALA ILPSVWLRNL SLLSYLSAGG VIATITVIVC LFWVGIGEGI GFHPSGALVN VTRLPVALGL YGYCYSGHSV FPNIYSSMEE
401: RSQFPFVLLF CFTVVTLVYA GVAVSGFMMF GESTMSQFTL NLPQQYIPSK IAIWMTVVNP YTKYALTMTP VALSIEEALP KKMQSYLVGM SVRTCLVFST
501: VAVALLFPYF ALVMALLGSV FTMLVALILP CACYLSIKKG AVPLWEIILC IIIIMIGVVC ACIGSYTSIN RMISSR

Best Arabidopsis Sequence Match ( AT2G39130.1 )
(BLAST)

001: MNHVPSDQSF YIESEDEDDR KDYVEEDGGS HSDSSDDVYD ENQAHIKPSS YTTAWPQSYR QSIDLYSSVP SPGIGFLGNN SMTRFGSSFL SSGLIRRHTP
101: ESLPTVTKPL LEEQADEQAL PKHRLSSQGL LSPIPSRRGS MRKDEKSSMV SHEIPMSRNS SYGQAVLNGL NVLCGVGILS TPYAAKEGGW LGLMILFVYG
201: LLSFYTGILL RYCLDSESDL ETYPDIGQAA FGTTGRIFVS IVLYLELYAC CVEYIILESD NLSSLYPNAA LSIGGFQLDA RHLFALLTTL AVLPTVWLRD
301: LSVLSYISAG GVIASVLVVL CLFWIGLVDE VGIHSKGTTL NLSTLPVAIG LYGYCYSGHA VFPNIYTSMA KPSQYPAVLL TCFGICTLMY AGVAVMGYTM
401: FGESTQSQFT LNLPQDLIAT KIAVWTTVVN PFTKYALTIS PVAMSLEELI PSRHIRSHWY AIGIRTLLVF STLLVGLAIP FFGLVMSLIG SLLTMLVTLI
501: LPPACFLSIV RRKVTPTQMM LCVLIIIVGA ISSVIGSYSA LSKIVEKLTN

Arabidopsis Description

AVT1CAmino acid transporter AVT1C [Source:UniProtKB/Swiss-Prot;Acc:F4IUW3]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.