Factsheet for PGSC0003DMT400028760

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g084830.1.1	Tomato	cytosol, peroxisome, plasma membrane	94.71	94.71
HORVU2Hr1G075350.2	Barley	endoplasmic reticulum, plasma membrane, vacuole	18.71	57.56
HORVU4Hr1G022660.1	Barley	extracellular	22.12	52.94
AT5G02170.1	Thale cress	plasma membrane	50.66	50.95
AT5G02180.1	Thale cress	plasma membrane	51.61	49.64
CDY55126	Canola	plasma membrane	48.02	49.42
Bra005712.1-P	Field mustard	plasma membrane	46.5	49.0
AT3G09340.1	Thale cress	plasma membrane	48.58	48.67
AT3G09330.1	Thale cress	cytosol, nucleus, plasma membrane	48.02	48.47
Bra009608.1-P	Field mustard	plasma membrane	50.09	48.45
CDY40336	Canola	plasma membrane	49.72	48.08
CDY10463	Canola	plasma membrane	49.34	47.8
Bra001315.1-P	Field mustard	cytosol, peroxisome, plasma membrane	47.07	47.16
CDY07919	Canola	cytosol, nucleus, plasma membrane	46.5	46.59
GSMUA_Achr6P34060_001	Banana	plasma membrane	48.02	46.01
PGSC0003DMT400036273	Potato	cytosol, nucleus, plasma membrane	38.0	45.27
CDY55127	Canola	cytosol, plasma membrane, plastid	48.2	43.66
CDX80809	Canola	plasma membrane	48.77	43.51
CDX80808	Canola	plasma membrane	20.42	42.69
PGSC0003DMT400019190	Potato	cytosol, nucleus, plasma membrane	47.26	41.53
EES17245	Sorghum	cytosol, peroxisome, plasma membrane	44.99	41.32
PGSC0003DMT400019843	Potato	peroxisome, plasma membrane, plastid, vacuole	11.53	40.67
PGSC0003DMT400076791	Potato	plasma membrane	31.95	40.24
Os12t0574000-01	Rice	plasma membrane	45.18	40.24
HORVU5Hr1G020560.3	Barley	plasma membrane	44.99	40.2
TraesCS5D01G091100.1	Wheat	plasma membrane	44.99	39.93
TraesCS5B01G084900.1	Wheat	plasma membrane	45.18	39.9
Zm00001d032325_P001	Maize	mitochondrion, plasma membrane, vacuole	20.23	39.63
TraesCS5A01G081500.1	Wheat	plasma membrane	44.42	39.36
PGSC0003DMT400080507	Potato	peroxisome	38.56	39.01
PGSC0003DMT400076795	Potato	plasma membrane	24.57	38.69
Zm00001d041534_P002	Maize	plasma membrane	44.05	38.26
PGSC0003DMT400008751	Potato	plasma membrane	30.43	37.79
Zm00001d030751_P001	Maize	plasma membrane	44.05	36.87
PGSC0003DMT400082135	Potato	plasma membrane	6.81	35.29
Zm00001d031629_P001	Maize	cytosol, plasma membrane, vacuole	11.72	34.44
PGSC0003DMT400055694	Potato	extracellular, plasma membrane	23.63	33.88
PGSC0003DMT400086252	Potato	plasma membrane	19.28	24.0
PGSC0003DMT400048045	Potato	plasma membrane	19.28	23.89
PGSC0003DMT400094217	Potato	plasma membrane	18.34	22.99
PGSC0003DMT400045065	Potato	plasma membrane, plastid	17.77	22.33
PGSC0003DMT400033422	Potato	plasma membrane	17.39	21.3

Protein Annotations

EnsemblPlants:PGSC0003DMT400028760	EnsemblPlantsGene:PGSC0003DMG400011068	EntrezGene:102591835	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:AA_transpt_TM	PANTHER:PTHR22950	PANTHER:PTHR22950:SF313	PFAM:PF01490	PGSC:PGSC0003DMG400011068	RefSeq:XP_006339019.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0002950785	UniProt:M1ARN0	MapMan:24.2.3.4.7	:

Description

Amino acid transporter [Source:PGSC_GENE;Acc:PGSC0003DMG400011068]

Coordinates

chr10:+:54327353..54331948

Molecular Weight (calculated)

57503.1 Da

IEP (calculated)

4.832

GRAVY (calculated)

0.523

Length

529 amino acids

Sequence
(BLAST)

001: MGMKLDEEYG ADRLLQIETD DEENEAHDTV NEDDDTGSEI SNHSVHAPFH SQLDSPTWPQ SYRRSMDVFT GVTPPSLSFL KGSSMLSSAY MRSQTLTPEY
101: SLSKPFISSP SLDREEIPTS NPSKLSIVSS AIFSAPELPP SQQCSYTQSV LNAINALCGI GILSIPYALK EGGWCSLFLL FLFGIITYYT GTLLKKCLES
201: SPGIETYPDI GQAAFGLSGR IFIAIALYAE LYSSCIEYLI MMSDNLGALF PNIHMEFAGL HLNSYQICAI ISTLVILPTV WLRNLSLLSI VSAGGVIALT
301: VVVICLLWVG VVDDVGFHPS GTAINIAKIP VTIGLYSFCY GSHSVFPNIY SSMKEPSRFP SVLLISFSTA FFSYLGVAIC GFLMFGENTN PQFTLNLPTK
401: LVTSKVAAWT VVITPLTKYA ITLTPVAFGI EEFLPSPQLR TYAVSLLIRT LLVFSTLVIA LAVPYFGSVM SLIGSSLVML VSLILPCVCY IQLRKDQITR
501: FQLAACSSII VVGLISAVVG TYSALTNMV

Best Arabidopsis Sequence Match ( AT5G02180.1 )
(BLAST)

001: MKLDEEFLHD RDHSFLTDDE ENQAALACSD DEHDGDDDGR RGGENSDSSS PLSRDRSDNN LSDVSNPPWP QSYRQSMDLL TGMTPPSVSF MPQSSSRRLA
101: SSFQKKQQSS FCDSLSSSSS KPLLSQPVPD KEETILPVNP QSQLKLSVTD LPLPEPNLCS FSQSVLNGTN VLCGLGLITM PYAIKESGWL GLPILLFFGV
201: ITCYTGVLMK RCLESSPGIQ TYPDIGQAAF GITGRFIISI LLYVELYAAC VEYIIMMSDN LSGLFPNVSL SIASGISLDS PQIFAILTTL LVLPTVWLKD
301: LSLLSYLSVG GVLASILLGI CLFWVGAVDG IGFHATGRVF DLSNLPVTIG IFGFGYSGHS VFPNIYSSMK DPSRFPLVLV ICFSFCTVLY IAVAVCGYTM
401: FGEAVESQFT LNMPKHFFPS KVAVWTAVIT PMTKYALTIT PIVMSLEELI PTAKMRSRGV SILFRTMLVT STLVVALSVP FFAIVAALIG SFLAMLVALI
501: FPCLCYLSIL KGKLSNTQIG LCIFIIVFGV VSGCCGTYSA ISRLANQMTD

Arabidopsis Description

AVT1DAmino acid transporter AVT1D [Source:UniProtKB/Swiss-Prot;Acc:Q8GYS4]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.