Factsheet for PGSC0003DMT400008751

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 4
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	golgi
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g013160.2.1	Tomato	plasma membrane	93.66	93.66
PGSC0003DMT400076795	Potato	plasma membrane	65.02	82.44
VIT_14s0108g00690.t01	Wine grape	plasma membrane	59.86	61.15
VIT_14s0108g00630.t01	Wine grape	plasma membrane	61.03	60.75
PGSC0003DMT400076791	Potato	plasma membrane	59.62	60.48
VIT_14s0108g00620.t01	Wine grape	plasma membrane	59.15	58.88
VIT_06s0061g00570.t01	Wine grape	plasma membrane	35.45	58.75
KRH40095	Soybean	plasma membrane	56.81	56.81
AT3G28960.2	Thale cress	plasma membrane	53.29	56.05
KRH01177	Soybean	plasma membrane	56.34	55.94
CDX86397	Canola	plasma membrane	53.05	55.8
Bra025369.1-P	Field mustard	plasma membrane	53.05	55.8
CDX85233	Canola	plasma membrane	52.82	55.56
KRH40094	Soybean	plasma membrane	55.16	55.04
KRH40411	Soybean	plasma membrane	34.74	55.02
VIT_06s0009g01140.t01	Wine grape	plasma membrane	54.23	54.87
CDY44419	Canola	plasma membrane	52.11	54.81
Bra033075.1-P	Field mustard	plasma membrane	52.11	54.81
KRH30199	Soybean	extracellular, plasma membrane	47.65	54.42
AT5G15240.1	Thale cress	plasma membrane	53.99	54.37
PGSC0003DMT400019843	Potato	peroxisome, plasma membrane, plastid, vacuole	18.78	53.33
CDX85556	Canola	plasma membrane	53.29	52.91
CDX91000	Canola	plasma membrane	53.05	52.56
KRG98784	Soybean	plasma membrane	44.37	51.36
KRG98240	Soybean	plasma membrane	51.64	50.34
KRH30194	Soybean	plasma membrane	51.64	50.34
PGSC0003DMT400082135	Potato	plasma membrane	11.5	48.04
KRH75803	Soybean	mitochondrion	28.4	38.66
CDY04048	Canola	plasma membrane	51.64	37.93
PGSC0003DMT400055694	Potato	extracellular, plasma membrane	27.0	31.17
PGSC0003DMT400080507	Potato	peroxisome	37.56	30.59
PGSC0003DMT400028760	Potato	cytosol, peroxisome, plasma membrane	37.79	30.43
PGSC0003DMT400036273	Potato	cytosol, nucleus, plasma membrane	28.17	27.03
PGSC0003DMT400019190	Potato	cytosol, nucleus, plasma membrane	34.74	24.58
PGSC0003DMT400094217	Potato	plasma membrane	24.18	24.41
PGSC0003DMT400045065	Potato	plasma membrane, plastid	22.77	23.04
PGSC0003DMT400086252	Potato	plasma membrane	21.6	21.65
PGSC0003DMT400048045	Potato	plasma membrane	21.36	21.31
PGSC0003DMT400033422	Potato	plasma membrane	20.89	20.6

Protein Annotations

EnsemblPlants:PGSC0003DMT400008751	EnsemblPlantsGene:PGSC0003DMG400003397	EntrezGene:102589739	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:AA_transpt_TM	PANTHER:PTHR22950	PANTHER:PTHR22950:SF280	PFAM:PF01490	PGSC:PGSC0003DMG400003397	RefSeq:XP_006343151.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI000294C8FE	UniProt:M0ZV08	MapMan:24.2.3.4.7	:

Description

Amino acid transporter [Source:PGSC_GENE;Acc:PGSC0003DMG400003397]

Coordinates

chr3:+:29797320..29799530

Molecular Weight (calculated)

47064.6 Da

IEP (calculated)

7.372

GRAVY (calculated)

0.668

Length

426 amino acids

Sequence
(BLAST)

001: METKTENDNS LSLPMLADDC DKAEKGIGSD RLISNGKTSF LKTTFHGLNA LSGVGILSTP YALSSGGWLS MILLLLIACV TFYTSLLIKR CMDFDPTITS
101: YPDIGDRAFG TRGRILVSVF MNLELYMVAT GFLILSGDNL HNLLPDVNFE FWGLQFGGKQ SFVLIVALLI LPTVLLKNMS ILAYVSASAV LATLVIIGLI
201: FWEATYDGIG FHKSGVVVNW GGIPTSFSLY AFCYCAHPVF PTLYTSMKNQ NQFSKVMLVC FVFSTVTYAS IAIMGYLMFG SDLESQITLN LQPEKFSSKL
301: AIYTALINPI AKYALMMTLI INRLEERLQS YCDKKSFSYL NRTILMISSV TVALTIPFFG YLMSLVGAFL SVTTSILVPC FCYLKILGTH KKLGYELVII
401: GFIIIMGIIV LVTGTYTSME EIIHLM

Best Arabidopsis Sequence Match ( AT5G15240.1 )
(BLAST)

001: MSEDKDYMSE PFIVKKIDDE ESLLDDYNPQ GNTSFSKTCF HGINALSGVG ILSVPYALAS GGWLSLIILF TVAITTFYCA ILIKRCMEMD PLLRSYPDIG
101: YKAFGNTGRV IVSIFMNLEL YLVATSFLIL EGDNLNKLFS NVGLNFMGLE FQGKQMFIIM VALIILPSVW LDNMRILSYV SASGVFASGV ILASIFSVGA
201: FEGVGFKNND SEVFRLNGVA TSVSLYAFCY CAHPVFPTLY TSMKNKRQFS NVMIICFTIC TFIYASVAVL GYLMYGSDVE SQITLNLPTD KLSSKVAIWT
301: TLVNPIAKFA LMVTPIIDAM RSRFSRVLPN KRASGFLLST ILVTSNVIVA LLLPFFGDLM SLVGAFLSAS ASVILPCLCY LKISGKYQRL GFETLVLIGI
401: TLTGIVVVIT GTYQAVKDIF GRF

Arabidopsis Description

AVT1JAmino acid transporter AVT1J [Source:UniProtKB/Swiss-Prot;Acc:Q9LXF8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.