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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • plasma membrane 4
  • golgi 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, nucleus, secretory
BaCelLo:nucleus
MultiLoc:plasma membrane
Plant-mPloc:golgi, plasma membrane
PProwler:secretory
WoLF PSORT:cytosol
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400071510
PGSC0003DMT400073246

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G38250.1 PGSC0003DMT400071510 AT4G19030.1 21798944
AT4G38250.1 PGSC0003DMT400073246 AT4G19030.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc10g048180.1.1 Tomato plasma membrane 92.82 93.91
CDY70145 Canola plasma membrane 57.87 62.03
CDY21456 Canola plasma membrane 57.64 61.79
AT2G42005.1 Thale cress plasma membrane 59.03 61.74
Bra000591.1-P Field mustard plasma membrane 57.18 61.14
PGSC0003DMT400086252 Potato plasma membrane 58.8 59.76
PGSC0003DMT400048045 Potato plasma membrane 59.03 59.72
VIT_03s0038g03900.t01 Wine grape plasma membrane 58.8 59.62
AT4G38250.1 Thale cress plasma membrane 59.72 59.17
PGSC0003DMT400045065 Potato plasma membrane, plastid 57.64 59.14
Bra033558.1-P Field mustard plasma membrane 48.61 58.66
CDY59097 Canola plastid 59.26 57.79
CDY54797 Canola plastid 58.8 57.08
PGSC0003DMT400094217 Potato plasma membrane 54.4 55.69
GSMUA_Achr1P02810_001 Banana cytosol, plasma membrane, vacuole 49.31 54.06
TraesCS6B01G271500.1 Wheat plasma membrane 51.85 53.21
TraesCS6A01G254100.1 Wheat plasma membrane 51.62 52.97
TraesCS2B01G421800.1 Wheat plasma membrane 51.85 52.96
TraesCS2D01G400900.1 Wheat plasma membrane 51.85 52.96
GSMUA_Achr5P11060_001 Banana plasma membrane 48.38 52.78
TraesCS6D01G235500.1 Wheat plasma membrane 51.39 52.73
Os04t0565500-01 Rice cytosol, plasma membrane, plastid 51.85 52.71
EES07473 Sorghum plasma membrane 51.85 52.58
TraesCS2A01G403800.1 Wheat endoplasmic reticulum, plasma membrane, plastid, vacuole 51.39 52.48
HORVU6Hr1G064740.1 Barley plasma membrane 50.93 52.26
Zm00001d017557_P001 Maize plastid 51.62 51.62
GSMUA_Achr4P25490_001 Banana plasma membrane 46.53 51.28
OQU82139 Sorghum peroxisome 50.0 50.35
GSMUA_AchrUn_... Banana plasma membrane, plastid, vacuole 48.15 49.76
EES12671 Sorghum plastid 52.08 45.36
Zm00001d026121_P001 Maize cytosol, peroxisome, plasma membrane, plastid 51.62 45.05
Os02t0670900-02 Rice endoplasmic reticulum, plasma membrane, plastid 50.69 44.97
PGSC0003DMT400076795 Potato plasma membrane 17.82 22.92
PGSC0003DMT400019843 Potato peroxisome, plasma membrane, plastid, vacuole 7.41 21.33
PGSC0003DMT400055694 Potato extracellular, plasma membrane 18.06 21.14
PGSC0003DMT400008751 Potato plasma membrane 20.6 20.89
PGSC0003DMT400082135 Potato plasma membrane 4.63 19.61
PGSC0003DMT400076791 Potato plasma membrane 18.98 19.52
PGSC0003DMT400080507 Potato peroxisome 21.06 17.4
PGSC0003DMT400028760 Potato cytosol, peroxisome, plasma membrane 21.3 17.39
PGSC0003DMT400036273 Potato cytosol, nucleus, plasma membrane 15.28 14.86
PGSC0003DMT400019190 Potato cytosol, nucleus, plasma membrane 20.14 14.45
Protein Annotations
EnsemblPlants:PGSC0003DMT400033422EnsemblPlantsGene:PGSC0003DMG400012842EntrezGene:102592938GO:GO:0005575GO:GO:0016020GO:GO:0016021
InterPro:AA_transpt_TMPANTHER:PTHR22950PANTHER:PTHR22950:SF464PFAM:PF01490PGSC:PGSC0003DMG400012842RefSeq:XP_006355291.1
SEG:segTMHMM:TMhelixUniParc:UPI0002953837UniProt:M1AZ43MapMan:24.2.3.4.4:
Description
Aromatic and neutral amino acid transporter [Source:PGSC_GENE;Acc:PGSC0003DMG400012842]
Coordinates
chr10:+:13369133..13370690
Molecular Weight (calculated)
47134.7 Da
IEP (calculated)
5.676
GRAVY (calculated)
0.725
Length
432 amino acids
Sequence
(BLAST)
001: MAFGCNGEAV IGESSDNATL LPKEEEEETP LLENCKSCLP KTFGNFFIAI VGAGVLGLPY TFMKTGWITG VLTLFAVVVL TYHGMMLLIH TRRRLDLTLI
101: GDSKISSFGD LGFVVCGPVG RFVVDVMIVL SQSGFCIGYL IFIGNTLCHL VSLSKGFGIP LFSSAKSLYI WGCLPFQLGL TSIPSLTLLA PLSIFADIAQ
201: IGAMGVVMVE DVQMFMNQFP SGIEAFGTIS TFYYGLGVAL YSFEGVGMAI PLETEMKDKS KYGKVLALAM FFIALMYGTF GVMGYFAYGS STKDIVLSNM
301: EKGVLSTSVK LGLCINLFFT FPLMLNPAFE VFERRFSNGN YCMWMRWILV LGVTMVALLV PNFADFMSLV GSSTCCALGF ILPALFHYQV FKGEMDRKGT
401: FMDLGLIVLG VFFGVTGTCY SLIEMFSQGK HV
Best Arabidopsis Sequence Match ( AT2G42005.1 )
(BLAST)
001: MGLEEQGRAR EDTPLLGKGR PLSSKFKTFA NVFIAIVGAG VLGLPYAFKR TGWLMGLLTL FSVAALINHC MMLLVHIRRK LGVSNIGSFG DLGFAACGNL
101: GRFVVDILII LSQAGFCVGY LIFIGNTLAN LSKPTKSTTL MSLRHLMGVS PKSLYIWGCF PFQLGLNSIK TLTHLAPLSI FADVVDLGAM AVVIVEDIKI
201: TVVQRPQVVA FGGMSVFFYG MGVAVYAFEG VGMVLPLESE TKDKDKFGKV LALSMLFIAV MYGSFGVLGY MAFGDDTMDI ITANLGAGVV SSLVQLGLCI
301: NLFFTFPLMM NPVFEIVERR FWSGMYCVWL RWLLVLAVTL VALLVPNFAD FLSLVGSSVC CALGFVLPSL FHLMVFKDEM EWKQRALDVG ILLLGVILGV
401: SGTWSSLTEI FQE
Arabidopsis Description
AVT3BAmino acid transporter AVT3B [Source:UniProtKB/Swiss-Prot;Acc:F4ILY9]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.