Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY21456 | Canola | plasma membrane | 85.47 | 87.59 |
| CDY70145 | Canola | plasma membrane | 85.23 | 87.34 |
| Bra000591.1-P | Field mustard | plasma membrane | 84.99 | 86.88 |
| AT4G38250.1 | Thale cress | plasma membrane | 79.18 | 75.0 |
| VIT_03s0038g03900.t01 | Wine grape | plasma membrane | 69.49 | 67.37 |
| AT5G65990.1 | Thale cress | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 63.2 | 61.12 |
| Solyc10g048180.1.1 | Tomato | plasma membrane | 62.23 | 60.19 |
| GSMUA_Achr1P02810_001 | Banana | cytosol, plasma membrane, vacuole | 57.38 | 60.15 |
| PGSC0003DMT400033422 | Potato | plasma membrane | 61.74 | 59.03 |
| EES07473 | Sorghum | plasma membrane | 60.77 | 58.92 |
| TraesCS6B01G271500.1 | Wheat | plasma membrane | 60.05 | 58.91 |
| TraesCS6A01G254100.1 | Wheat | plasma membrane | 59.81 | 58.67 |
| TraesCS6D01G235500.1 | Wheat | plasma membrane | 59.81 | 58.67 |
| Os04t0565500-01 | Rice | cytosol, plasma membrane, plastid | 60.29 | 58.59 |
| GSMUA_Achr5P11060_001 | Banana | plasma membrane | 56.17 | 58.59 |
| HORVU6Hr1G064740.1 | Barley | plasma membrane | 59.56 | 58.43 |
| Zm00001d017557_P001 | Maize | plastid | 60.77 | 58.1 |
| TraesCS2B01G421800.1 | Wheat | plasma membrane | 59.08 | 57.68 |
| TraesCS2D01G400900.1 | Wheat | plasma membrane | 59.08 | 57.68 |
| TraesCS2A01G403800.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid, vacuole | 58.6 | 57.21 |
| GSMUA_Achr4P25490_001 | Banana | plasma membrane | 53.03 | 55.87 |
| GSMUA_AchrUn_... | Banana | plasma membrane, plastid, vacuole | 56.17 | 55.5 |
| OQU82139 | Sorghum | peroxisome | 56.66 | 54.55 |
| Os02t0670900-02 | Rice | endoplasmic reticulum, plasma membrane, plastid | 60.77 | 51.54 |
| Zm00001d026121_P001 | Maize | cytosol, peroxisome, plasma membrane, plastid | 59.81 | 49.9 |
| EES12671 | Sorghum | plastid | 59.81 | 49.8 |
| AT3G11900.2 | Thale cress | plasma membrane | 35.84 | 34.26 |
| AT5G15240.1 | Thale cress | plasma membrane | 23.97 | 23.4 |
| AT3G28960.2 | Thale cress | plasma membrane | 22.76 | 23.21 |
| AT5G16740.1 | Thale cress | plasma membrane | 22.52 | 21.83 |
| AT3G09330.1 | Thale cress | cytosol, nucleus, plasma membrane | 24.7 | 19.47 |
| AT3G09340.1 | Thale cress | plasma membrane | 24.7 | 19.32 |
| AT5G02170.1 | Thale cress | plasma membrane | 24.46 | 19.2 |
| AT5G02180.1 | Thale cress | plasma membrane | 25.18 | 18.91 |
| AT2G39130.2 | Thale cress | cytosol, nucleus, plasma membrane | 25.18 | 18.91 |
| AT2G41190.1 | Thale cress | cytosol, peroxisome, plasma membrane | 24.21 | 18.66 |
| AT3G54830.1 | Thale cress | nucleus | 22.28 | 16.85 |
Protein Annotations
| MapMan:24.2.3.4.4 | EntrezGene:818801 | UniProt:A0A178VNZ6 | InterPro:AA_transpt_TM | ProteinID:AEC10062.1 | EMBL:AK118204 |
| ArrayExpress:AT2G42005 | EnsemblPlantsGene:AT2G42005 | RefSeq:AT2G42005 | TAIR:AT2G42005 | RefSeq:AT2G42005-TAIR-G | EnsemblPlants:AT2G42005.1 |
| TAIR:AT2G42005.1 | UniProt:F4ILY9 | GO:GO:0003333 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005774 | GO:GO:0006810 |
| GO:GO:0006865 | GO:GO:0008150 | GO:GO:0015171 | GO:GO:0015175 | GO:GO:0015804 | GO:GO:0016020 |
| GO:GO:0016021 | RefSeq:NP_850361.1 | ProteinID:OAP07524.1 | PFAM:PF01490 | PANTHER:PTHR22950 | PANTHER:PTHR22950:SF464 |
| TMHMM:TMhelix | EMBL:U90439 | UniParc:UPI0000196E6F | SEG:seg | : | : |
Description
AVT3BAmino acid transporter AVT3B [Source:UniProtKB/Swiss-Prot;Acc:F4ILY9]
Coordinates
chr2:-:17530960..17532689
Molecular Weight (calculated)
44964.5 Da
IEP (calculated)
7.987
GRAVY (calculated)
0.818
Length
413 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLEEQGRAR EDTPLLGKGR PLSSKFKTFA NVFIAIVGAG VLGLPYAFKR TGWLMGLLTL FSVAALINHC MMLLVHIRRK LGVSNIGSFG DLGFAACGNL
101: GRFVVDILII LSQAGFCVGY LIFIGNTLAN LSKPTKSTTL MSLRHLMGVS PKSLYIWGCF PFQLGLNSIK TLTHLAPLSI FADVVDLGAM AVVIVEDIKI
201: TVVQRPQVVA FGGMSVFFYG MGVAVYAFEG VGMVLPLESE TKDKDKFGKV LALSMLFIAV MYGSFGVLGY MAFGDDTMDI ITANLGAGVV SSLVQLGLCI
301: NLFFTFPLMM NPVFEIVERR FWSGMYCVWL RWLLVLAVTL VALLVPNFAD FLSLVGSSVC CALGFVLPSL FHLMVFKDEM EWKQRALDVG ILLLGVILGV
401: SGTWSSLTEI FQE
101: GRFVVDILII LSQAGFCVGY LIFIGNTLAN LSKPTKSTTL MSLRHLMGVS PKSLYIWGCF PFQLGLNSIK TLTHLAPLSI FADVVDLGAM AVVIVEDIKI
201: TVVQRPQVVA FGGMSVFFYG MGVAVYAFEG VGMVLPLESE TKDKDKFGKV LALSMLFIAV MYGSFGVLGY MAFGDDTMDI ITANLGAGVV SSLVQLGLCI
301: NLFFTFPLMM NPVFEIVERR FWSGMYCVWL RWLLVLAVTL VALLVPNFAD FLSLVGSSVC CALGFVLPSL FHLMVFKDEM EWKQRALDVG ILLLGVILGV
401: SGTWSSLTEI FQE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.