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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • plasma membrane 3
  • extracellular 1
  • endoplasmic reticulum 2
  • vacuole 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:endoplasmic reticulum, nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:plasma membrane
PProwler:secretory
WoLF PSORT:endoplasmic reticulum
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX91000 Canola plasma membrane 86.29 84.88
CDX85556 Canola plasma membrane 85.34 84.15
PGSC0003DMT400076795 Potato plasma membrane 46.1 58.04
PGSC0003DMT400076791 Potato plasma membrane 56.03 56.43
AT3G28960.2 Thale cress plasma membrane 52.01 54.32
Solyc03g013160.2.1 Tomato plasma membrane 54.61 54.23
PGSC0003DMT400008751 Potato plasma membrane 54.37 53.99
Solyc03g013440.2.1 Tomato plasma membrane 43.03 52.6
AT3G09330.1 Thale cress cytosol, nucleus, plasma membrane 38.3 30.92
AT3G09340.1 Thale cress plasma membrane 38.53 30.87
AT2G41190.1 Thale cress cytosol, peroxisome, plasma membrane 39.01 30.78
AT5G02170.1 Thale cress plasma membrane 38.06 30.61
AT5G02180.1 Thale cress plasma membrane 38.3 29.45
AT5G16740.1 Thale cress plasma membrane 29.31 29.11
AT2G39130.2 Thale cress cytosol, nucleus, plasma membrane 37.35 28.73
AT3G54830.1 Thale cress nucleus 35.7 27.66
AT2G42005.1 Thale cress plasma membrane 23.4 23.97
AT4G38250.1 Thale cress plasma membrane 21.75 21.1
AT5G65990.1 Thale cress endoplasmic reticulum, peroxisome, plasma membrane, plastid 21.28 21.08
AT3G11900.2 Thale cress plasma membrane 20.8 20.37
Protein Annotations
MapMan:24.2.3.4.7EntrezGene:831376InterPro:AA_transpt_TMProteinID:AED92134.1ArrayExpress:AT5G15240EnsemblPlantsGene:AT5G15240
RefSeq:AT5G15240TAIR:AT5G15240RefSeq:AT5G15240-TAIR-GEnsemblPlants:AT5G15240.1TAIR:AT5G15240.1EMBL:BX829753
ProteinID:CAB89334.1GO:GO:0003333GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810
GO:GO:0006865GO:GO:0008150GO:GO:0015171GO:GO:0016020GO:GO:0016021RefSeq:NP_197028.1
PFAM:PF01490PO:PO:0000293PO:PO:0007115PO:PO:0007611PO:PO:0007616PO:PO:0009005
PO:PO:0009006PO:PO:0009025PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046
PO:PO:0025022PO:PO:0025281PANTHER:PTHR22950PANTHER:PTHR22950:SF280UniProt:Q9LXF8TMHMM:TMhelix
UniParc:UPI0000048B41SEG:seg::::
Description
AVT1JAmino acid transporter AVT1J [Source:UniProtKB/Swiss-Prot;Acc:Q9LXF8]
Coordinates
chr5:+:4947577..4950445
Molecular Weight (calculated)
46475.5 Da
IEP (calculated)
7.894
GRAVY (calculated)
0.669
Length
423 amino acids
Sequence
(BLAST)
001: MSEDKDYMSE PFIVKKIDDE ESLLDDYNPQ GNTSFSKTCF HGINALSGVG ILSVPYALAS GGWLSLIILF TVAITTFYCA ILIKRCMEMD PLLRSYPDIG
101: YKAFGNTGRV IVSIFMNLEL YLVATSFLIL EGDNLNKLFS NVGLNFMGLE FQGKQMFIIM VALIILPSVW LDNMRILSYV SASGVFASGV ILASIFSVGA
201: FEGVGFKNND SEVFRLNGVA TSVSLYAFCY CAHPVFPTLY TSMKNKRQFS NVMIICFTIC TFIYASVAVL GYLMYGSDVE SQITLNLPTD KLSSKVAIWT
301: TLVNPIAKFA LMVTPIIDAM RSRFSRVLPN KRASGFLLST ILVTSNVIVA LLLPFFGDLM SLVGAFLSAS ASVILPCLCY LKISGKYQRL GFETLVLIGI
401: TLTGIVVVIT GTYQAVKDIF GRF
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.