Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 4
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400008751 | Potato | plasma membrane | 82.44 | 65.02 |
| KRH40411 | Soybean | plasma membrane | 43.15 | 53.9 |
| PGSC0003DMT400019843 | Potato | peroxisome, plasma membrane, plastid, vacuole | 23.51 | 52.67 |
| VIT_14s0108g00690.t01 | Wine grape | plasma membrane | 63.69 | 51.32 |
| PGSC0003DMT400076791 | Potato | plasma membrane | 63.99 | 51.19 |
| PGSC0003DMT400082135 | Potato | plasma membrane | 15.48 | 50.98 |
| KRH30199 | Soybean | extracellular, plasma membrane | 55.95 | 50.4 |
| VIT_14s0108g00630.t01 | Wine grape | plasma membrane | 63.69 | 50.0 |
| VIT_14s0108g00620.t01 | Wine grape | plasma membrane | 63.1 | 49.53 |
| CDX86397 | Canola | plasma membrane | 57.44 | 47.65 |
| Bra025369.1-P | Field mustard | plasma membrane | 57.44 | 47.65 |
| KRG98784 | Soybean | plasma membrane | 52.08 | 47.55 |
| VIT_06s0009g01140.t01 | Wine grape | plasma membrane | 59.52 | 47.51 |
| CDX85233 | Canola | plasma membrane | 57.14 | 47.41 |
| KRH40095 | Soybean | plasma membrane | 59.23 | 46.71 |
| AT3G28960.2 | Thale cress | plasma membrane | 55.95 | 46.42 |
| CDY44419 | Canola | plasma membrane | 55.95 | 46.42 |
| Bra033075.1-P | Field mustard | plasma membrane | 55.95 | 46.42 |
| KRH01177 | Soybean | plasma membrane | 58.93 | 46.15 |
| AT5G15240.1 | Thale cress | plasma membrane | 58.04 | 46.1 |
| KRH40094 | Soybean | plasma membrane | 58.33 | 45.9 |
| CDX85556 | Canola | plasma membrane | 57.14 | 44.76 |
| CDX91000 | Canola | plasma membrane | 56.85 | 44.42 |
| KRG98240 | Soybean | plasma membrane | 55.65 | 42.79 |
| KRH30194 | Soybean | plasma membrane | 55.65 | 42.79 |
| VIT_06s0061g00570.t01 | Wine grape | plasma membrane | 31.55 | 41.25 |
| CDY04048 | Canola | plasma membrane | 55.65 | 32.24 |
| PGSC0003DMT400055694 | Potato | extracellular, plasma membrane | 31.55 | 28.73 |
| KRH75803 | Soybean | mitochondrion | 25.6 | 27.48 |
| PGSC0003DMT400080507 | Potato | peroxisome | 40.48 | 26.0 |
| PGSC0003DMT400028760 | Potato | cytosol, peroxisome, plasma membrane | 38.69 | 24.57 |
| PGSC0003DMT400036273 | Potato | cytosol, nucleus, plasma membrane | 29.46 | 22.3 |
| PGSC0003DMT400019190 | Potato | cytosol, nucleus, plasma membrane | 37.5 | 20.93 |
| PGSC0003DMT400094217 | Potato | plasma membrane | 24.7 | 19.67 |
| PGSC0003DMT400045065 | Potato | plasma membrane, plastid | 24.11 | 19.24 |
| PGSC0003DMT400033422 | Potato | plasma membrane | 22.92 | 17.82 |
| PGSC0003DMT400086252 | Potato | plasma membrane | 22.02 | 17.41 |
| PGSC0003DMT400048045 | Potato | plasma membrane | 22.02 | 17.33 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400076795 | EnsemblPlantsGene:PGSC0003DMG400029867 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:AA_transpt_TM |
| PANTHER:PTHR22950 | PANTHER:PTHR22950:SF280 | PFAM:PF01490 | PGSC:PGSC0003DMG400029867 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI0002964FC6 | UniProt:M1CXE4 | MapMan:24.2.3.4.7 | : | : | : |
Description
Amino acid transporter [Source:PGSC_GENE;Acc:PGSC0003DMG400029867]
Coordinates
chr3:+:27067967..27069204
Molecular Weight (calculated)
36723.8 Da
IEP (calculated)
8.425
GRAVY (calculated)
0.831
Length
336 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFDPTITSY PDIGDRAFGT SGRILVSIFM TLELYLVATG FLILAGDNLH NLLPDVNFEF WGLGIGGKQS FVLIVALLIL PTVLLKKMSI LAYVSASAVL
101: ASLVIIGSIF WAATYDGIGF HKSGVVVNWG GIPTSFSLYA FCYCAHPVFP TLYTSMNKQK QFSKVMLLCF LFATITYASI AAMGYSMFGS EVESQITLNL
201: PTGNFSSKLA IYTTLINPIA KYSLMMTPVI NRLEERFQSN SNKESSFSPA IRITLVISSV IVALTIPFFG YLMSLVGAFL SVTASVLLPC LCYLKISGTY
301: RKLGFELVII GLIVLMGILI LVTGTYTSLI EIIRHL
101: ASLVIIGSIF WAATYDGIGF HKSGVVVNWG GIPTSFSLYA FCYCAHPVFP TLYTSMNKQK QFSKVMLLCF LFATITYASI AAMGYSMFGS EVESQITLNL
201: PTGNFSSKLA IYTTLINPIA KYSLMMTPVI NRLEERFQSN SNKESSFSPA IRITLVISSV IVALTIPFFG YLMSLVGAFL SVTASVLLPC LCYLKISGTY
301: RKLGFELVII GLIVLMGILI LVTGTYTSLI EIIRHL
001: MEEDNQEIQR DNVGSSSFFK TCFNALNALS GIGILSVPYS LARGGWLSLS LLLLLAVTAF YTSLLITKCM NADRNIKTYP DIGERAFGRP GRIIVSVFMH
101: LELYLVTTGF LILEGDNLHN LFPGFTIEMI GLRLNGKQAF MATVAFVIMP TLWWDNLSVL SYVSMSGVLA TTVTLGSISW IGAFDGIGFH QKGKLINWSG
201: IPTALSLYAF CYGAHPVLPT LYSSMKSKHQ FNNVLLICFI LCTIGYTSMA VLGYLMYGSQ TLSQITLNLP IHKTSSKVAI YTTLVNPVAK YALMITPTVN
301: TIKDWFPSRY SKKAYLHLLI STFFIISSVV IAETLPFFGY MMSLVGALLS VTVSILLPCL CYLKIFGNYK KIGCETIMLF GMVVMSVFVG VIGTYIALRD
401: IIGSV
101: LELYLVTTGF LILEGDNLHN LFPGFTIEMI GLRLNGKQAF MATVAFVIMP TLWWDNLSVL SYVSMSGVLA TTVTLGSISW IGAFDGIGFH QKGKLINWSG
201: IPTALSLYAF CYGAHPVLPT LYSSMKSKHQ FNNVLLICFI LCTIGYTSMA VLGYLMYGSQ TLSQITLNLP IHKTSSKVAI YTTLVNPVAK YALMITPTVN
301: TIKDWFPSRY SKKAYLHLLI STFFIISSVV IAETLPFFGY MMSLVGALLS VTVSILLPCL CYLKIFGNYK KIGCETIMLF GMVVMSVFVG VIGTYIALRD
401: IIGSV
Arabidopsis Description
AVT1IAmino acid transporter AVT1I [Source:UniProtKB/Swiss-Prot;Acc:F4J1Q9]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.