Factsheet for PGSC0003DMT400036273

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
plasma membrane 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g063030.2.1	Tomato	plasma membrane	51.35	97.02
Bra005061.1-P	Field mustard	cytosol, nucleus, plasma membrane	64.41	62.04
Solyc03g063050.1.1	Tomato	extracellular, plasma membrane	34.46	57.52
PGSC0003DMT400019190	Potato	cytosol, nucleus, plasma membrane	75.45	55.65
VIT_13s0019g04660.t01	Wine grape	cytosol, nucleus, plasma membrane	69.59	54.88
KRG91942	Soybean	plasma membrane	67.12	54.78
CDY18351	Canola	plastid	62.61	54.62
AT2G39130.2	Thale cress	cytosol, nucleus, plasma membrane	66.22	53.45
Os04t0201800-00	Rice	plasma membrane, plastid	48.2	53.23
CDY44630	Canola	plasma membrane	65.32	52.82
CDX93284	Canola	cytosol, nucleus, plasma membrane	64.86	52.75
Bra017088.1-P	Field mustard	cytosol, nucleus, plasma membrane	64.86	52.75
CDX74865	Canola	plasma membrane	65.32	52.54
KRH34828	Soybean	plasma membrane	66.22	52.41
Bra007103.1-P	Field mustard	plasma membrane	46.4	52.28
CDX73443	Canola	cytosol, nucleus, plasma membrane	62.61	51.77
CDX78269	Canola	plasma membrane	61.49	51.51
AT3G54830.1	Thale cress	nucleus	61.94	50.37
GSMUA_Achr1P03170_001	Banana	cytosol, nucleus, plasma membrane	61.49	48.49
GSMUA_Achr5P10650_001	Banana	cytosol, nucleus, plasma membrane	60.14	48.19
TraesCSU01G023100.1	Wheat	cytosol, peroxisome, plasma membrane	57.21	45.6
TraesCS2B01G065200.1	Wheat	cytosol, peroxisome, plasma membrane	57.21	45.6
HORVU2Hr1G008090.4	Barley	cytosol, peroxisome, plasma membrane	57.66	45.55
TraesCS2A01G052500.1	Wheat	plasma membrane	56.53	45.31
KRH38592	Soybean	endoplasmic reticulum	24.32	45.19
Os02t0101000-01	Rice	cytosol, nucleus, plasma membrane	57.88	45.01
Zm00001d004340_P002	Maize	plasma membrane	57.66	44.91
Zm00001d037057_P001	Maize	cytosol, nucleus, plasma membrane	52.93	44.68
TraesCS6B01G007400.1	Wheat	cytosol, peroxisome, plasma membrane	55.63	43.87
TraesCS6A01G002400.1	Wheat	cytosol, nucleus, plasma membrane	55.63	43.64
Zm00001d048577_P001	Maize	cytosol, nucleus, plasma membrane	54.95	43.03
TraesCS6D01G003200.1	Wheat	cytosol, nucleus, plasma membrane	55.18	42.98
EES06091	Sorghum	plasma membrane	55.41	42.71
HORVU6Hr1G001480.1	Barley	plasma membrane	55.41	41.41
EER89806	Sorghum	cytosol, nucleus, plasma membrane	52.7	40.98
KXG25873	Sorghum	plasma membrane	57.43	38.75
PGSC0003DMT400028760	Potato	cytosol, peroxisome, plasma membrane	45.27	38.0
Zm00001d043640_P001	Maize	plasma membrane	14.41	37.87
PGSC0003DMT400080507	Potato	peroxisome	43.02	36.52
PGSC0003DMT400076791	Potato	plasma membrane	31.31	33.1
PGSC0003DMT400076795	Potato	plasma membrane	22.3	29.46
PGSC0003DMT400008751	Potato	plasma membrane	27.03	28.17
PGSC0003DMT400055694	Potato	extracellular, plasma membrane	21.4	25.75
Zm00001d044994_P001	Maize	cytosol, plasma membrane, vacuole	6.31	18.3
PGSC0003DMT400086252	Potato	plasma membrane	17.12	17.88
PGSC0003DMT400048045	Potato	plasma membrane	17.12	17.8
PGSC0003DMT400045065	Potato	plasma membrane, plastid	16.44	17.34
PGSC0003DMT400094217	Potato	plasma membrane	15.77	16.59
PGSC0003DMT400019843	Potato	peroxisome, plasma membrane, plastid, vacuole	5.41	16.0
PGSC0003DMT400033422	Potato	plasma membrane	14.86	15.28
Solyc03g063040.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	1.35	4.88
KRG99573	Soybean	cytosol, nucleus, plasma membrane	0.68	2.8
PGSC0003DMT400082135	Potato	plasma membrane	0.45	1.96

Protein Annotations

EnsemblPlants:PGSC0003DMT400036273	EnsemblPlantsGene:PGSC0003DMG400013962	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:AA_transpt_TM
PANTHER:PTHR22950	PANTHER:PTHR22950:SF240	PFAM:PF01490	PGSC:PGSC0003DMG400013962	SEG:seg	TMHMM:TMhelix
UniParc:UPI000295287F	UniProt:M1B3F9	MapMan:24.2.3.4.7	:	:	:

Description

Amino acid transporter [Source:PGSC_GENE;Acc:PGSC0003DMG400013962]

Coordinates

chr3:-:16125457..16131700

Molecular Weight (calculated)

48653.3 Da

IEP (calculated)

4.909

GRAVY (calculated)

0.112

Length

444 amino acids

Sequence
(BLAST)

001: MKNSISEQSF YIESEEEDDE HLEKHENEEE GNESDFSNED NNDDETNRPN SLTSAWPQSY RQSMDLYSNV PSPSLHFLGT PSLSRLGSSF FGSSLIRRHT
101: PEVLPSLHKP LILPAEEEKA PHRRSSHGLI PPLHPRKSSI KKIPDIERPS KDAHGLPISN QSTYGQAVVN GMNVLCGVGL LSTPYAVKEG GWAGLSILFI
201: FGILSFYTGM LLRYCLDSQP GLETYPDIGQ AAFGTMGRIV ISIILYVELY ASCVEYIILE GDNLSAIFPN AHLSLGGFEL DARHLFVVIA ALAILPTVWL
301: RDLSVLSYIS VGGVIASILV VLCLYWAGLV DHVGFESKGT VLNLPTLPVA IGLYGFCYSG HAVFPNIYTS LADRSQFPAV LLTSFGLVTL LYGGTAVLGY
401: LMFGDSAESQ FTLNLPKGLM ASKVAVWTTV VNPFTKYPFP ESMM

Best Arabidopsis Sequence Match ( AT2G39130.1 )
(BLAST)

001: MNHVPSDQSF YIESEDEDDR KDYVEEDGGS HSDSSDDVYD ENQAHIKPSS YTTAWPQSYR QSIDLYSSVP SPGIGFLGNN SMTRFGSSFL SSGLIRRHTP
101: ESLPTVTKPL LEEQADEQAL PKHRLSSQGL LSPIPSRRGS MRKDEKSSMV SHEIPMSRNS SYGQAVLNGL NVLCGVGILS TPYAAKEGGW LGLMILFVYG
201: LLSFYTGILL RYCLDSESDL ETYPDIGQAA FGTTGRIFVS IVLYLELYAC CVEYIILESD NLSSLYPNAA LSIGGFQLDA RHLFALLTTL AVLPTVWLRD
301: LSVLSYISAG GVIASVLVVL CLFWIGLVDE VGIHSKGTTL NLSTLPVAIG LYGYCYSGHA VFPNIYTSMA KPSQYPAVLL TCFGICTLMY AGVAVMGYTM
401: FGESTQSQFT LNLPQDLIAT KIAVWTTVVN PFTKYALTIS PVAMSLEELI PSRHIRSHWY AIGIRTLLVF STLLVGLAIP FFGLVMSLIG SLLTMLVTLI
501: LPPACFLSIV RRKVTPTQMM LCVLIIIVGA ISSVIGSYSA LSKIVEKLTN

Arabidopsis Description

AVT1CAmino acid transporter AVT1C [Source:UniProtKB/Swiss-Prot;Acc:F4IUW3]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.