Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plasma membrane 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G003200.1 | Wheat | cytosol, nucleus, plasma membrane | 99.12 | 98.42 |
| TraesCS6B01G007400.1 | Wheat | cytosol, peroxisome, plasma membrane | 96.82 | 97.34 |
| HORVU6Hr1G001480.1 | Barley | plasma membrane | 96.64 | 92.09 |
| Zm00001d044994_P001 | Maize | cytosol, plasma membrane, vacuole | 22.08 | 81.7 |
| Os02t0101000-01 | Rice | cytosol, nucleus, plasma membrane | 81.8 | 81.09 |
| EER89806 | Sorghum | cytosol, nucleus, plasma membrane | 78.62 | 77.93 |
| Zm00001d043640_P001 | Maize | plasma membrane | 22.08 | 73.96 |
| TraesCS2A01G052500.1 | Wheat | plasma membrane | 69.61 | 71.12 |
| Zm00001d037057_P001 | Maize | cytosol, nucleus, plasma membrane | 63.25 | 68.06 |
| Solyc03g063030.2.1 | Tomato | plasma membrane | 27.39 | 65.96 |
| Bra007103.1-P | Field mustard | plasma membrane | 42.76 | 61.42 |
| GSMUA_Achr1P03170_001 | Banana | cytosol, nucleus, plasma membrane | 59.36 | 59.68 |
| GSMUA_Achr5P10650_001 | Banana | cytosol, nucleus, plasma membrane | 57.6 | 58.84 |
| VIT_13s0019g04660.t01 | Wine grape | cytosol, nucleus, plasma membrane | 57.77 | 58.08 |
| Solyc11g008440.1.1 | Tomato | cytosol, nucleus, plasma membrane | 56.18 | 57.3 |
| CDY18351 | Canola | plastid | 51.24 | 56.97 |
| PGSC0003DMT400036273 | Potato | cytosol, nucleus, plasma membrane | 43.64 | 55.63 |
| CDX78269 | Canola | plasma membrane | 51.94 | 55.47 |
| AT2G39130.2 | Thale cress | cytosol, nucleus, plasma membrane | 53.89 | 55.45 |
| CDY44630 | Canola | plasma membrane | 53.36 | 55.01 |
| Bra005061.1-P | Field mustard | cytosol, nucleus, plasma membrane | 44.7 | 54.88 |
| CDX74865 | Canola | plasma membrane | 53.18 | 54.53 |
| Bra017088.1-P | Field mustard | cytosol, nucleus, plasma membrane | 52.47 | 54.4 |
| CDX93284 | Canola | cytosol, nucleus, plasma membrane | 52.3 | 54.21 |
| CDX73443 | Canola | cytosol, nucleus, plasma membrane | 51.24 | 54.0 |
| Solyc03g063040.2.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 11.66 | 53.66 |
| PGSC0003DMT400019190 | Potato | cytosol, nucleus, plasma membrane | 54.95 | 51.66 |
| AT3G54830.1 | Thale cress | nucleus | 47.7 | 49.45 |
| TraesCS6A01G348300.2 | Wheat | cytosol, plasma membrane, vacuole | 37.81 | 44.86 |
| TraesCS6A01G348400.1 | Wheat | cytosol, peroxisome, plasma membrane | 41.87 | 44.8 |
| TraesCS7A01G188100.1 | Wheat | plasma membrane | 31.27 | 44.36 |
| Solyc03g063050.1.1 | Tomato | extracellular, plasma membrane | 20.32 | 43.23 |
| TraesCS5A01G081500.1 | Wheat | plasma membrane | 45.05 | 42.71 |
| TraesCS2A01G339100.1 | Wheat | plasma membrane | 30.92 | 41.18 |
| TraesCS2A01G338600.1 | Wheat | plasma membrane | 31.98 | 41.14 |
| TraesCS2A01G282000.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid, vacuole | 29.15 | 40.54 |
| TraesCS2A01G338800.1 | Wheat | plasma membrane | 31.1 | 39.37 |
| TraesCS4A01G018500.1 | Wheat | peroxisome, plasma membrane, vacuole | 28.8 | 37.82 |
| TraesCS4A01G018400.1 | Wheat | peroxisome, plasma membrane, vacuole | 28.09 | 36.89 |
| TraesCS4A01G018300.1 | Wheat | peroxisome, plasma membrane, vacuole | 25.27 | 35.22 |
| KRG99991 | Soybean | cytosol, nucleus, peroxisome | 17.49 | 34.74 |
| TraesCS4A01G240700.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 25.27 | 31.64 |
| TraesCS6A01G254100.1 | Wheat | plasma membrane | 18.02 | 24.23 |
| TraesCS5A01G472500.1 | Wheat | plasma membrane | 17.67 | 23.75 |
| TraesCS5A01G472600.1 | Wheat | plasma membrane | 17.67 | 23.53 |
| TraesCS2A01G403800.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid, vacuole | 16.96 | 22.7 |
| TraesCS5A01G176900.1 | Wheat | plasma membrane | 16.25 | 21.85 |
| TraesCS2A01G279700.1 | Wheat | plasma membrane | 16.08 | 21.67 |
| TraesCS2A01G279600.1 | Wheat | plasma membrane | 0.71 | 1.13 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G002400.1 | EnsemblPlantsGene:TraesCS6A01G002400 | InterPro:AA_transpt_TM | PANTHER:PTHR22950 | PANTHER:PTHR22950:SF240 | PFAM:PF01490 |
| SEG:seg | TMHMM:TMhelix | MapMan:24.2.3.4.7 | : | : | : |
Description
No Description!
Coordinates
chr6A:-:942509..947206
Molecular Weight (calculated)
61389.3 Da
IEP (calculated)
6.230
GRAVY (calculated)
0.303
Length
566 amino acids
Sequence
(BLAST)
(BLAST)
001: MKSLLGEERS FIIESDDDDE EDPAHRGDGV GHGDDGSSSD SSSCATPRGG GGDSQPNSYT NQWPQSYRQS IDILSNVQSP SLGFLGTPTL SRLSNSFLNS
101: SFLNSSFRGK TPEIVSNLVK PLIRPTTSDE QQQQQQHEDI RKSSQYLLPS RKPSLQQIPE DQKPLVVGHE VSPYQQCSYT QGAMNGINVL CGVGILSTPY
201: AIKQGGWLGL VILVVFALLA WYTGVLLRRC LDSKEGLQTY PDIGHAAFGT TGRIAISIIL YVELYACCIE YLILESDNLS KLFPNVHLNI GGLTINSHVF
301: FAILTTLVVM PTTWLRDLTC LSYISAGGVV ASILVVICLC WIGVVDHVGF ENKGTALNLP GIPIAIGLYG YCYSGHGVFP NIYSSLKNRN QFPSILFTCI
401: GFSTILFTAA AVMGYKMFGE STESQFTLNL PENLVVSKIA VWATVANPIT KYALTITPLA MSLEELLPRS QQKYSNIIIL RSALVVSTLI IALSVPFFAL
501: VMALIGSLFA MLVTYILPCA CFLAILKAKA TWYQTATCSF IIAVGVTCAC VGTYSSLSGI VQNYAT
101: SFLNSSFRGK TPEIVSNLVK PLIRPTTSDE QQQQQQHEDI RKSSQYLLPS RKPSLQQIPE DQKPLVVGHE VSPYQQCSYT QGAMNGINVL CGVGILSTPY
201: AIKQGGWLGL VILVVFALLA WYTGVLLRRC LDSKEGLQTY PDIGHAAFGT TGRIAISIIL YVELYACCIE YLILESDNLS KLFPNVHLNI GGLTINSHVF
301: FAILTTLVVM PTTWLRDLTC LSYISAGGVV ASILVVICLC WIGVVDHVGF ENKGTALNLP GIPIAIGLYG YCYSGHGVFP NIYSSLKNRN QFPSILFTCI
401: GFSTILFTAA AVMGYKMFGE STESQFTLNL PENLVVSKIA VWATVANPIT KYALTITPLA MSLEELLPRS QQKYSNIIIL RSALVVSTLI IALSVPFFAL
501: VMALIGSLFA MLVTYILPCA CFLAILKAKA TWYQTATCSF IIAVGVTCAC VGTYSSLSGI VQNYAT
001: MNHVPSDQSF YIESEDEDDR KDYVEEDGGS HSDSSDDVYD ENQAHIKPSS YTTAWPQSYR QSIDLYSSVP SPGIGFLGNN SMTRFGSSFL SSGLIRRHTP
101: ESLPTVTKPL LEEQADEQAL PKHRLSSQGL LSPIPSRRGS MRKDEKSSMV SHEIPMSRNS SYGQAVLNGL NVLCGVGILS TPYAAKEGGW LGLMILFVYG
201: LLSFYTGILL RYCLDSESDL ETYPDIGQAA FGTTGRIFVS IVLYLELYAC CVEYIILESD NLSSLYPNAA LSIGGFQLDA RHLFALLTTL AVLPTVWLRD
301: LSVLSYISAG GVIASVLVVL CLFWIGLVDE VGIHSKGTTL NLSTLPVAIG LYGYCYSGHA VFPNIYTSMA KPSQYPAVLL TCFGICTLMY AGVAVMGYTM
401: FGESTQSQFT LNLPQDLIAT KIAVWTTVVN PFTKYALTIS PVAMSLEELI PSRHIRSHWY AIGIRTLLVF STLLVGLAIP FFGLVMSLIG SLLTMLVTLI
501: LPPACFLSIV RRKVTPTQMM LCVLIIIVGA ISSVIGSYSA LSKIVEKLTN
101: ESLPTVTKPL LEEQADEQAL PKHRLSSQGL LSPIPSRRGS MRKDEKSSMV SHEIPMSRNS SYGQAVLNGL NVLCGVGILS TPYAAKEGGW LGLMILFVYG
201: LLSFYTGILL RYCLDSESDL ETYPDIGQAA FGTTGRIFVS IVLYLELYAC CVEYIILESD NLSSLYPNAA LSIGGFQLDA RHLFALLTTL AVLPTVWLRD
301: LSVLSYISAG GVIASVLVVL CLFWIGLVDE VGIHSKGTTL NLSTLPVAIG LYGYCYSGHA VFPNIYTSMA KPSQYPAVLL TCFGICTLMY AGVAVMGYTM
401: FGESTQSQFT LNLPQDLIAT KIAVWTTVVN PFTKYALTIS PVAMSLEELI PSRHIRSHWY AIGIRTLLVF STLLVGLAIP FFGLVMSLIG SLLTMLVTLI
501: LPPACFLSIV RRKVTPTQMM LCVLIIIVGA ISSVIGSYSA LSKIVEKLTN
Arabidopsis Description
AVT1CAmino acid transporter AVT1C [Source:UniProtKB/Swiss-Prot;Acc:F4IUW3]
SUBAcon: [plasma membrane,nucleus,cytosol]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.