CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
plasma membrane 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044994_P001	Maize	cytosol, plasma membrane, vacuole	25.39	94.77
Zm00001d043640_P001	Maize	plasma membrane	24.52	82.84
EES06091	Sorghum	plasma membrane	82.66	81.94
TraesCS6A01G002400.1	Wheat	cytosol, nucleus, plasma membrane	77.93	78.62
TraesCS6D01G003200.1	Wheat	cytosol, nucleus, plasma membrane	78.28	78.42
TraesCS6B01G007400.1	Wheat	cytosol, peroxisome, plasma membrane	77.06	78.15
Zm00001d037057_P001	Maize	cytosol, nucleus, plasma membrane	71.1	77.19
HORVU6Hr1G001480.1	Barley	plasma membrane	77.58	74.58
Solyc03g063030.2.1	Tomato	plasma membrane	26.97	65.53
Bra007103.1-P	Field mustard	plasma membrane	42.73	61.93
KXG25873	Sorghum	plasma membrane	71.28	61.85
GSMUA_Achr1P03170_001	Banana	cytosol, nucleus, plasma membrane	57.27	58.08
GSMUA_Achr5P10650_001	Banana	cytosol, nucleus, plasma membrane	54.99	56.68
VIT_13s0019g04660.t01	Wine grape	cytosol, nucleus, plasma membrane	55.87	56.66
CDY18351	Canola	plastid	50.09	56.19
CDX78269	Canola	plasma membrane	50.61	54.53
Solyc11g008440.1.1	Tomato	cytosol, nucleus, plasma membrane	52.89	54.41
AT2G39130.2	Thale cress	cytosol, nucleus, plasma membrane	52.36	54.36
CDY44630	Canola	plasma membrane	52.19	54.28
Bra005061.1-P	Field mustard	cytosol, nucleus, plasma membrane	43.61	54.01
Bra017088.1-P	Field mustard	cytosol, nucleus, plasma membrane	51.49	53.85
CDX74865	Canola	plasma membrane	52.01	53.8
CDX93284	Canola	cytosol, nucleus, plasma membrane	51.31	53.66
Solyc03g063040.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	11.56	53.66
CDX73443	Canola	cytosol, nucleus, plasma membrane	49.91	53.07
PGSC0003DMT400036273	Potato	cytosol, nucleus, plasma membrane	40.98	52.7
PGSC0003DMT400019190	Potato	cytosol, nucleus, plasma membrane	51.49	48.84
AT3G54830.1	Thale cress	nucleus	46.58	48.72
EES17245	Sorghum	cytosol, peroxisome, plasma membrane	43.78	43.4
KXG19641	Sorghum	plasma membrane	29.95	42.86
EES07655	Sorghum	plasma membrane	40.46	41.92
EES07657	Sorghum	plasma membrane	37.3	40.8
Solyc03g063050.1.1	Tomato	extracellular, plasma membrane	18.74	40.23
EES10943	Sorghum	cytosol, peroxisome, plasma membrane	31.35	38.74
OQU87120	Sorghum	peroxisome, plasma membrane, vacuole	27.85	35.89
EES01014	Sorghum	plasma membrane	26.27	34.56
KRG99991	Soybean	cytosol, nucleus, peroxisome	16.46	32.98
EES07473	Sorghum	plasma membrane	17.69	23.71
EER98235	Sorghum	plastid	17.69	23.49
EER93207	Sorghum	plasma membrane	16.99	22.77
OQU82139	Sorghum	peroxisome	16.11	21.45
EES12671	Sorghum	plastid	17.34	19.96

Protein Annotations

MapMan:24.2.3.4.7	EntrezGene:8073048	InterPro:AA_transpt_TM	UniProt:C5Z358	EnsemblPlants:EER89806	ProteinID:EER89806
ProteinID:EER89806.1	GO:GO:0003333	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0015171	GO:GO:0016020	GO:GO:0016021	PFAM:PF01490	PANTHER:PTHR22950
PANTHER:PTHR22950:SF240	EnsemblPlantsGene:SORBI_3010G146700	unigene:Sbi.1838	TMHMM:TMhelix	UniParc:UPI0001A89707	RefSeq:XP_002438439.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:41902661..41909970

Molecular Weight (calculated)

62027.9 Da

IEP (calculated)

5.741

GRAVY (calculated)

0.280

Length

571 amino acids

Sequence
(BLAST)

001: MRSPVPERSL IIESDDDDDT QSAVATNWIG HGHGHDEEEP EQEPGSDSDS SSSSSSCATP RRGPSSPAYT QQWPQSYRQS IDILSSVHSS NLSFLGTPTL
101: SRLSNSFLAI TDSFRGKAPE TISNFVKPLL GPTSSDEQQQ QQHEDTRKSS QYIMPSRKSS LEQIPEDQKP LVVGHEASRN RNCSYTQGVM NGINVLCGVG
201: ILSTPYAIKQ GGWIGLVILC LFALLAWYTG VLLRHCLDSK EGLETYPDIG HAAFGSTGRI VISIILYVEL YACCIEYLIL ESDNLTKLFP TAHLTIGSLT
301: LNSHVFFAIL TTIIVMPTTW LRDLSCLSYI SAGGVIASIL VVICLFLVGV VNDVGFENEG TALNLPGIPI AIGLYGYCYS GHGVFPNIYS SLKNRNQFPS
401: ILFTCIGLST FLYAGAAVMG YKMFGEATES QFTLNLPDNS LISKVAVWTT VANPITKYAL TIIPLAMSLE ELLPPNQQKY STIIMLRSSL VMSTLLIALS
501: VPFFGLVMAL VGSLFAMLVT YILPCACFLA ILKTKVGWHQ IAACSFIIAV GVCCACVGTY SSLSKIIQNY T

Best Arabidopsis Sequence Match ( AT2G39130.1 )
(BLAST)

001: MNHVPSDQSF YIESEDEDDR KDYVEEDGGS HSDSSDDVYD ENQAHIKPSS YTTAWPQSYR QSIDLYSSVP SPGIGFLGNN SMTRFGSSFL SSGLIRRHTP
101: ESLPTVTKPL LEEQADEQAL PKHRLSSQGL LSPIPSRRGS MRKDEKSSMV SHEIPMSRNS SYGQAVLNGL NVLCGVGILS TPYAAKEGGW LGLMILFVYG
201: LLSFYTGILL RYCLDSESDL ETYPDIGQAA FGTTGRIFVS IVLYLELYAC CVEYIILESD NLSSLYPNAA LSIGGFQLDA RHLFALLTTL AVLPTVWLRD
301: LSVLSYISAG GVIASVLVVL CLFWIGLVDE VGIHSKGTTL NLSTLPVAIG LYGYCYSGHA VFPNIYTSMA KPSQYPAVLL TCFGICTLMY AGVAVMGYTM
401: FGESTQSQFT LNLPQDLIAT KIAVWTTVVN PFTKYALTIS PVAMSLEELI PSRHIRSHWY AIGIRTLLVF STLLVGLAIP FFGLVMSLIG SLLTMLVTLI
501: LPPACFLSIV RRKVTPTQMM LCVLIIIVGA ISSVIGSYSA LSKIVEKLTN

Arabidopsis Description

AVT1CAmino acid transporter AVT1C [Source:UniProtKB/Swiss-Prot;Acc:F4IUW3]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.