CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048577_P001	Maize	cytosol, nucleus, plasma membrane	93.23	94.71
Os02t0101000-01	Rice	cytosol, nucleus, plasma membrane	83.16	83.89
EER89806	Sorghum	cytosol, nucleus, plasma membrane	81.94	82.66
Solyc03g063030.2.1	Tomato	plasma membrane	27.08	66.38
KXG25873	Sorghum	plasma membrane	73.09	63.98
Bra007103.1-P	Field mustard	plasma membrane	43.75	63.96
GSMUA_Achr1P03170_001	Banana	cytosol, nucleus, plasma membrane	60.76	62.17
VIT_13s0019g04660.t01	Wine grape	cytosol, nucleus, plasma membrane	58.33	59.68
GSMUA_Achr5P10650_001	Banana	cytosol, nucleus, plasma membrane	57.29	59.57
CDY18351	Canola	plastid	50.87	57.56
Solyc11g008440.1.1	Tomato	cytosol, nucleus, plasma membrane	55.38	57.48
CDX78269	Canola	plasma membrane	52.6	57.17
AT2G39130.2	Thale cress	cytosol, nucleus, plasma membrane	54.34	56.91
CDY44630	Canola	plasma membrane	53.99	56.65
CDX74865	Canola	plasma membrane	53.82	56.16
Solyc03g063040.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	11.98	56.1
Bra005061.1-P	Field mustard	cytosol, nucleus, plasma membrane	44.79	55.97
CDX73443	Canola	cytosol, nucleus, plasma membrane	51.91	55.68
CDX93284	Canola	cytosol, nucleus, plasma membrane	52.78	55.68
Bra017088.1-P	Field mustard	cytosol, nucleus, plasma membrane	52.78	55.68
PGSC0003DMT400036273	Potato	cytosol, nucleus, plasma membrane	42.71	55.41
AT3G54830.1	Thale cress	nucleus	48.96	51.65
PGSC0003DMT400019190	Potato	cytosol, nucleus, plasma membrane	53.65	51.33
KXG19641	Sorghum	plasma membrane	31.6	45.61
EES17245	Sorghum	cytosol, peroxisome, plasma membrane	45.31	45.31
Solyc03g063050.1.1	Tomato	extracellular, plasma membrane	19.44	42.11
EES10943	Sorghum	cytosol, peroxisome, plasma membrane	33.68	41.99
EES07655	Sorghum	plasma membrane	40.1	41.92
EES07657	Sorghum	plasma membrane	36.98	40.8
OQU87120	Sorghum	peroxisome, plasma membrane, vacuole	29.34	38.15
EES01014	Sorghum	plasma membrane	27.95	37.1
KRG99991	Soybean	cytosol, nucleus, peroxisome	17.19	34.74
EER98235	Sorghum	plastid	17.53	23.49
EES07473	Sorghum	plasma membrane	17.36	23.47
EER93207	Sorghum	plasma membrane	16.67	22.54
OQU82139	Sorghum	peroxisome	15.62	20.98
EES12671	Sorghum	plastid	16.67	19.35

Protein Annotations

MapMan:24.2.3.4.7	EntrezGene:8074153	InterPro:AA_transpt_TM	UniProt:C5XRG7	EnsemblPlants:EES06091	ProteinID:EES06091
ProteinID:EES06091.1	GO:GO:0003333	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0015171	GO:GO:0016020	GO:GO:0016021	PFAM:PF01490	PANTHER:PTHR22950
PANTHER:PTHR22950:SF240	EnsemblPlantsGene:SORBI_3004G001000	unigene:Sbi.2251	TMHMM:TMhelix	UniParc:UPI0001A85D95	RefSeq:XP_002453115.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:88829..95868

Molecular Weight (calculated)

62537.7 Da

IEP (calculated)

7.865

GRAVY (calculated)

0.242

Length

576 amino acids

Sequence
(BLAST)

001: MRSSVSERSL IIESDDDDND DRPQSQPSAA AARSRRRHHQ HEEGSGSGSG SGSDSDSGSS SSSCATPRGH AQATASSYTQ QWPQSYRQSI NILSSVQSPN
101: LSFLGTPTLS RLSNSFITNS FRGKTPEIIS NLVKPLLRPT TSDDLQQQHE ERKSSQYLLP SRKPSLQQIP EDQKPVPVAH EVSPYHKCSY TQAVVNGINV
201: LCGVGILSTP YAIKQGGWLG LVILCLFAIL AWYTGVLLRR CLDSKEGLET YPDIGHAAFG TTGRIAISII LYVELYACCI EYLILEGDNL SKLFPNAHLT
301: IGSLTVNSHV LFAILTTIIV MPTTWLRDLS CLSYLSAGGV IASILGVICL FWVGVVDNVD FENKGTALNL PGIPIAIGLY GYCYSGHGVF PNIYSSLKNR
401: NQFPSILFTC IGLSTILFAG AAVMGYKMFG EATQSQFTLN LPENLVVSKI AVWTTVANPI TKYALTITPL AMSLEELLPP NQQKYSNIVM LRSALVVSTL
501: LIALSVPFFG LVMALVGSLL TMLVTYILPC ACFLAILRRK VSWHQVAACS FIIMVGVCCA CVGTYSSLSK IIQNYT

Best Arabidopsis Sequence Match ( AT2G39130.1 )
(BLAST)

001: MNHVPSDQSF YIESEDEDDR KDYVEEDGGS HSDSSDDVYD ENQAHIKPSS YTTAWPQSYR QSIDLYSSVP SPGIGFLGNN SMTRFGSSFL SSGLIRRHTP
101: ESLPTVTKPL LEEQADEQAL PKHRLSSQGL LSPIPSRRGS MRKDEKSSMV SHEIPMSRNS SYGQAVLNGL NVLCGVGILS TPYAAKEGGW LGLMILFVYG
201: LLSFYTGILL RYCLDSESDL ETYPDIGQAA FGTTGRIFVS IVLYLELYAC CVEYIILESD NLSSLYPNAA LSIGGFQLDA RHLFALLTTL AVLPTVWLRD
301: LSVLSYISAG GVIASVLVVL CLFWIGLVDE VGIHSKGTTL NLSTLPVAIG LYGYCYSGHA VFPNIYTSMA KPSQYPAVLL TCFGICTLMY AGVAVMGYTM
401: FGESTQSQFT LNLPQDLIAT KIAVWTTVVN PFTKYALTIS PVAMSLEELI PSRHIRSHWY AIGIRTLLVF STLLVGLAIP FFGLVMSLIG SLLTMLVTLI
501: LPPACFLSIV RRKVTPTQMM LCVLIIIVGA ISSVIGSYSA LSKIVEKLTN

Arabidopsis Description

AVT1CAmino acid transporter AVT1C [Source:UniProtKB/Swiss-Prot;Acc:F4IUW3]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.