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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome

Predictor Summary:
  • plastid 2
  • peroxisome 2
  • plasma membrane 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:peroxisome
Any Predictor:peroxisome, plastid, secretory
BaCelLo:plastid
MultiLoc:peroxisome
Plant-mPloc:plasma membrane, plastid
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI

Inferred distinct locusB in Crop

locusBlocations
EES05123

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G65990.1 EES05123 AT1G27300.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os04t0565500-01 Rice cytosol, plasma membrane, plastid 83.45 84.24
TraesCS2A01G403800.1 Wheat endoplasmic reticulum, plasma membrane, plastid, vacuole 80.19 81.32
TraesCS2B01G421800.1 Wheat plasma membrane 79.95 81.09
TraesCS2D01G400900.1 Wheat plasma membrane 79.72 80.85
EES12671 Sorghum plastid 91.84 79.44
Zm00001d026121_P001 Maize cytosol, peroxisome, plasma membrane, plastid 89.28 77.37
EES07473 Sorghum plasma membrane 74.59 75.12
GSMUA_Achr1P02810_001 Banana cytosol, plasma membrane, vacuole 63.17 68.78
GSMUA_Achr5P11060_001 Banana plasma membrane 59.44 64.39
GSMUA_AchrUn_... Banana plasma membrane, plastid, vacuole 61.77 63.4
GSMUA_Achr4P25490_001 Banana plasma membrane 57.81 63.27
VIT_07s0031g02140.t01 Wine grape plasma membrane 58.97 59.95
VIT_03s0038g03900.t01 Wine grape plasma membrane 59.21 59.62
PGSC0003DMT400045065 Potato plasma membrane, plastid 56.64 57.72
CDY70145 Canola plasma membrane 53.85 57.32
CDY21456 Canola plasma membrane 53.85 57.32
Bra000591.1-P Field mustard plasma membrane 53.61 56.93
Solyc02g082510.1.1 Tomato plasma membrane 56.18 56.71
PGSC0003DMT400048045 Potato plasma membrane 56.41 56.67
AT2G42005.1 Thale cress plasma membrane 54.55 56.66
PGSC0003DMT400086252 Potato plasma membrane 55.94 56.47
AT4G38250.1 Thale cress plasma membrane 57.11 56.19
AT5G65990.1 Thale cress endoplasmic reticulum, peroxisome, plasma membrane, plastid 55.71 55.97
Solyc03g032090.1.1 Tomato plasma membrane 55.71 55.97
PGSC0003DMT400094217 Potato plasma membrane 54.31 55.21
CDY59097 Canola plastid 56.64 54.85
Bra029326.1-P Field mustard peroxisome 54.31 54.44
CDY42861 Canola peroxisome 54.08 54.21
CDY54797 Canola plastid 56.18 54.16
KRH39423 Soybean plasma membrane 53.85 53.97
KRH28932 Soybean cytosol, plasma membrane 45.22 53.89
CDY47026 Canola peroxisome, plastid 53.85 53.6
Bra033558.1-P Field mustard plasma membrane 44.29 53.07
Solyc02g082520.1.1 Tomato cytosol, peroxisome, plasma membrane 50.12 51.31
Solyc10g048180.1.1 Tomato plasma membrane 50.58 50.82
PGSC0003DMT400033422 Potato plasma membrane 50.35 50.0
EER98235 Sorghum plastid 36.6 36.51
EER93207 Sorghum plasma membrane 33.33 33.57
OQU87120 Sorghum peroxisome, plasma membrane, vacuole 23.31 22.57
KXG19641 Sorghum plasma membrane 19.81 21.3
EES10943 Sorghum cytosol, peroxisome, plasma membrane 22.84 21.21
EES01014 Sorghum plasma membrane 20.98 20.74
EES07657 Sorghum plasma membrane 22.61 18.58
EES07655 Sorghum plasma membrane 21.21 16.52
EES17245 Sorghum cytosol, peroxisome, plasma membrane 21.91 16.32
EER89806 Sorghum cytosol, nucleus, plasma membrane 21.45 16.11
EES06091 Sorghum plasma membrane 20.98 15.62
KXG25873 Sorghum plasma membrane 22.61 14.74
Protein Annotations
EnsemblPlants:OQU82139EnsemblPlantsGene:SORBI_3006G180100EntrezGene:8057586GO:GO:0005575GO:GO:0016020GO:GO:0016021
InterPro:AA_transpt_TMPANTHER:PTHR22950PANTHER:PTHR22950:SF259PFAM:PF01490ProteinID:OQU82139ProteinID:OQU82139.1
RefSeq:XP_002448342.1SEG:segTMHMM:TMhelixUniParc:UPI0001A8769EUniProt:A0A1Z5REZ1MapMan:24.2.3.4.4
Description
hypothetical protein
Coordinates
chr6:-:53441524..53443512
Molecular Weight (calculated)
45474.4 Da
IEP (calculated)
6.932
GRAVY (calculated)
0.905
Length
429 amino acids
Sequence
(BLAST)
001: MEFDKEASSS SSRLDAAPLL PQYGLHCGGA GAGAGGHLSS QPKTFANVFI AVVGTGVLGL PYTFSRTGWA AGTLLLLAVA ALTFHCMMLL VATRRRIADE
101: HTKIASFGDL GHGIYGAPGR HAVDAMLVLS QVSFCVGYVI FISNTMAHLY PIVADSPASP LLTAKALFIW AMLPFQLGLN SIKTLTLLAP LSIFADVVDL
201: GAMGVVLSQD ASIWLANKPP VFAFAGPAEL LYGLGVAVYA FEAIGMVLPL EAEAADKRRF GATLALSMAF IAVMYVLFGA MGYLAFGSAT RDIITTNLGT
301: GWFSVLVQLG LCISLFFAMP VSMNPVYEVA ERLICGRRYA WWLRWILVVV VGLLAMLVPN FADFISLVGS SVCVVLLFVL PAAFHIKVFG AEIGWTGLVG
401: DVTVIVIGIA LAVFGTWTSL VQIFSSSNV
Best Arabidopsis Sequence Match ( AT4G38250.1 )
(BLAST)
001: MGFQNEASSS SYTLKIPPPA REDSPLLGKG PPLSSQFKTF ANVFIAVVGA GVLGLPYAFK RTGWLMGVLL LVSVSVLTHH CMMLLVYTRR KLDSFNAGIS
101: KIGSFGDLGF AVCGSLGRIV VDLFIILSQA GFCVGYLIFI GTTLANLSDP ESPTSLRHQF TRLGSEFLGV SSKSLYIWGC FPFQLGLNSI KTLTHLAPLS
201: IFADIVDLGA MAVVIVEDSM IILKQRPDVV AFGGMSLFLY GMGVAVYSFE GVGMVLPLES EMKDKDKFGK VLALGMGFIS LIYIAFGILG YLAFGEDTMD
301: IITANLGAGL VSTVVQLGLC INLFFTFPLM MNPVFEIVER RFSRGMYSAW LRWVLVLAVT LVALFVPNFA DFLSLVGSST CCVLGFVLPA LFHLLVFKEE
401: MGWLQWSSDT AIVVLGVVLA VSGTWSSLSE IFSVKV
Arabidopsis Description
AVT3CAmino acid transporter AVT3C [Source:UniProtKB/Swiss-Prot;Acc:Q9SVG0]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.