CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plasma membrane, plastid
BaCelLo:	plastid
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70145	Canola	plasma membrane	99.01	99.01
AT2G42005.1	Thale cress	plasma membrane	87.59	85.47
CDY54797	Canola	plastid	80.89	73.26
CDY59097	Canola	plastid	80.15	72.91
VIT_03s0038g03900.t01	Wine grape	plasma membrane	70.47	66.67
CDY42861	Canola	peroxisome	66.25	62.38
CDY47026	Canola	peroxisome, plastid	66.25	61.95
GSMUA_Achr1P02810_001	Banana	cytosol, plasma membrane, vacuole	59.31	60.66
GSMUA_Achr5P11060_001	Banana	plasma membrane	58.31	59.34
Solyc10g048180.1.1	Tomato	plasma membrane	62.78	59.25
TraesCS6B01G271500.1	Wheat	plasma membrane	61.04	58.43
TraesCS6D01G235500.1	Wheat	plasma membrane	60.79	58.19
TraesCS6A01G254100.1	Wheat	plasma membrane	60.79	58.19
HORVU6Hr1G064740.1	Barley	plasma membrane	60.55	57.96
EES07473	Sorghum	plasma membrane	61.04	57.75
PGSC0003DMT400033422	Potato	plasma membrane	61.79	57.64
Os04t0565500-01	Rice	cytosol, plasma membrane, plastid	60.55	57.41
GSMUA_Achr4P25490_001	Banana	plasma membrane	55.83	57.4
TraesCS2D01G400900.1	Wheat	plasma membrane	60.05	57.21
TraesCS2B01G421800.1	Wheat	plasma membrane	60.05	57.21
TraesCS2A01G403800.1	Wheat	endoplasmic reticulum, plasma membrane, plastid, vacuole	59.8	56.97
Zm00001d017557_P001	Maize	plastid	61.04	56.94
GSMUA_AchrUn_...	Banana	plasma membrane, plastid, vacuole	58.56	56.46
OQU82139	Sorghum	peroxisome	57.32	53.85
Os02t0670900-02	Rice	endoplasmic reticulum, plasma membrane, plastid	61.54	50.92
EES12671	Sorghum	plastid	61.04	49.6
Zm00001d026121_P001	Maize	cytosol, peroxisome, plasma membrane, plastid	60.3	49.09
CDY53922	Canola	plasma membrane	37.72	35.68
CDY08487	Canola	plasma membrane	36.72	35.49
CDX73848	Canola	plasma membrane	37.22	35.21
CDY01068	Canola	plasma membrane	36.23	34.84
CDX73972	Canola	extracellular, plastid	7.94	24.43
CDX86397	Canola	plasma membrane	23.57	23.46
CDX85233	Canola	plasma membrane	23.57	23.46
CDY44419	Canola	plasma membrane	23.08	22.96
CDX85556	Canola	plasma membrane	23.33	21.91
CDX91000	Canola	plasma membrane	23.33	21.86
CDY38090	Canola	plasma membrane	22.33	20.79
CDX79951	Canola	cytosol, nucleus, plasma membrane	26.3	20.04
CDY23868	Canola	cytosol, nucleus, plasma membrane	26.3	20.04
CDY35425	Canola	plasma membrane	25.81	20.0
CDY22507	Canola	plasma membrane	25.81	20.0
CDY06942	Canola	cytosol, peroxisome, plasma membrane	25.81	19.48
CDX78269	Canola	plasma membrane	25.56	19.43
CDY67831	Canola	cytosol, peroxisome, plasma membrane	25.56	19.32
CDY55126	Canola	plasma membrane	24.57	19.26
CDX73443	Canola	cytosol, nucleus, plasma membrane	25.56	19.18
CDX80808	Canola	plasma membrane	11.91	18.97
CDY07919	Canola	cytosol, nucleus, plasma membrane	24.57	18.75
CDY18351	Canola	plastid	23.57	18.66
CDY44630	Canola	plasma membrane	25.06	18.4
CDX74865	Canola	plasma membrane	25.06	18.3
CDY40336	Canola	plasma membrane	24.81	18.28
CDY10463	Canola	plasma membrane	24.07	17.77
CDX93284	Canola	cytosol, nucleus, plasma membrane	24.07	17.77
CDY55127	Canola	cytosol, plasma membrane, plastid	25.31	17.47
CDX80809	Canola	plasma membrane	25.31	17.2
CDX73974	Canola	cytosol, nucleus, plasma membrane	16.87	16.63
CDX85489	Canola	vacuole	17.62	16.44
CDY04048	Canola	plasma membrane	23.08	16.03

Protein Annotations

EnsemblPlants:CDY21456	EnsemblPlantsGene:GSBRNA2T00015860001	GO:A0A078G7R8	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:AA_transpt_TM	PANTHER:PTHR22950	PANTHER:PTHR22950:SF464	PFAM:PF01490	ProteinID:CDY21456	ProteinID:CDY21456.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EF2042	UniProt:A0A078G7R8	MapMan:24.2.3.4.4	:

Description

BnaC03g27410DBnaC03g27410D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G7R8]

Coordinates

chrLK032121:+:208014..209225

Molecular Weight (calculated)

43764.9 Da

IEP (calculated)

7.362

GRAVY (calculated)

0.887

Length

403 amino acids

Sequence
(BLAST)

001: MGPAREDTPL LGKERPLSSQ FKTFANVFIA IVGAGVLGLP YAFKRTGWLM GVLTLFSVAA LITHCMMLLV HIRRKLGAAN IGSFGDLGFA VCGPLGRFLV
101: DILIILSQAG FCVGYLIFIG TTLANLFNPT TTLTLRHVSP KSLYIWGCFP FQLGLNSVKT LTHLAPLSIF ADVVDLGAMA VVIVEDVKIA VEQRPDVVAF
201: GGMSVFFYGM GVAVYAFEGV GMVLPLESEM KDKEKFGKVL ALSMGIIALI FGAFGVLGYM AFGDETMDII TANLGPGLVS SLVKLGLCIN LFFTFPLMMN
301: PVFEIVERRF WSGMYCVWLR WLLVLAVTLV ALLVPNFADF LSLVGSSVCC ALGFVLPALF HLMVFKDEIG WKQQTFNSGI VLLGLVLAVS GTWSSLSEIF
401: NWN

Best Arabidopsis Sequence Match ( AT2G42005.1 )
(BLAST)

001: MGLEEQGRAR EDTPLLGKGR PLSSKFKTFA NVFIAIVGAG VLGLPYAFKR TGWLMGLLTL FSVAALINHC MMLLVHIRRK LGVSNIGSFG DLGFAACGNL
101: GRFVVDILII LSQAGFCVGY LIFIGNTLAN LSKPTKSTTL MSLRHLMGVS PKSLYIWGCF PFQLGLNSIK TLTHLAPLSI FADVVDLGAM AVVIVEDIKI
201: TVVQRPQVVA FGGMSVFFYG MGVAVYAFEG VGMVLPLESE TKDKDKFGKV LALSMLFIAV MYGSFGVLGY MAFGDDTMDI ITANLGAGVV SSLVQLGLCI
301: NLFFTFPLMM NPVFEIVERR FWSGMYCVWL RWLLVLAVTL VALLVPNFAD FLSLVGSSVC CALGFVLPSL FHLMVFKDEM EWKQRALDVG ILLLGVILGV
401: SGTWSSLTEI FQE

Arabidopsis Description

AVT3BAmino acid transporter AVT3B [Source:UniProtKB/Swiss-Prot;Acc:F4ILY9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.