CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX78905
CDX98596
CDX99411
CDY01565

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38250.1	CDX78905	AT4G19030.1	21798944
AT4G38250.1	CDX98596	AT4G19030.1	21798944
AT4G38250.1	CDX99411	AT4G19030.1	21798944
AT4G38250.1	CDY01565	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY54797	Canola	plastid	98.42	97.98
AT4G38250.1	Thale cress	plasma membrane	90.29	91.74
CDY21456	Canola	plasma membrane	72.91	80.15
CDY70145	Canola	plasma membrane	72.46	79.65
VIT_03s0038g03900.t01	Wine grape	plasma membrane	68.17	70.89
CDY47026	Canola	peroxisome, plastid	61.4	63.11
CDY42861	Canola	peroxisome	60.95	63.08
GSMUA_Achr1P02810_001	Banana	cytosol, plasma membrane, vacuole	55.76	62.69
GSMUA_Achr5P11060_001	Banana	plasma membrane	54.4	60.86
TraesCS6B01G271500.1	Wheat	plasma membrane	57.79	60.81
TraesCS6D01G235500.1	Wheat	plasma membrane	57.56	60.57
TraesCS6A01G254100.1	Wheat	plasma membrane	57.56	60.57
HORVU6Hr1G064740.1	Barley	plasma membrane	57.34	60.33
Solyc10g048180.1.1	Tomato	plasma membrane	58.01	60.19
Os04t0565500-01	Rice	cytosol, plasma membrane, plastid	57.56	60.0
TraesCS2D01G400900.1	Wheat	plasma membrane	56.88	59.57
TraesCS2B01G421800.1	Wheat	plasma membrane	56.88	59.57
TraesCS2A01G403800.1	Wheat	endoplasmic reticulum, plasma membrane, plastid, vacuole	56.66	59.34
PGSC0003DMT400033422	Potato	plasma membrane	57.79	59.26
EES07473	Sorghum	plasma membrane	56.21	58.45
GSMUA_Achr4P25490_001	Banana	plasma membrane	51.69	58.42
Zm00001d017557_P001	Maize	plastid	56.66	58.1
OQU82139	Sorghum	peroxisome	54.85	56.64
GSMUA_AchrUn_...	Banana	plasma membrane, plastid, vacuole	53.27	56.46
Os02t0670900-02	Rice	endoplasmic reticulum, plasma membrane, plastid	58.01	52.77
EES12671	Sorghum	plastid	58.01	51.81
Zm00001d026121_P001	Maize	cytosol, peroxisome, plasma membrane, plastid	57.34	51.31
CDY53922	Canola	plasma membrane	34.99	36.38
CDX73848	Canola	plasma membrane	34.54	35.92
CDY08487	Canola	plasma membrane	33.41	35.49
CDY01068	Canola	plasma membrane	33.18	35.08
CDX73972	Canola	extracellular, plastid	7.0	23.66
CDX85233	Canola	plasma membrane	21.44	23.46
CDX86397	Canola	plasma membrane	21.44	23.46
CDY44419	Canola	plasma membrane	20.99	22.96
CDY38090	Canola	plasma membrane	21.67	22.17
CDX85556	Canola	plasma membrane	20.32	20.98
CDX91000	Canola	plasma membrane	20.09	20.7
CDY22507	Canola	plasma membrane	23.48	20.0
CDX78269	Canola	plasma membrane	23.93	20.0
CDY23868	Canola	cytosol, nucleus, plasma membrane	23.7	19.85
CDX79951	Canola	cytosol, nucleus, plasma membrane	23.7	19.85
CDY35425	Canola	plasma membrane	23.25	19.81
CDX73443	Canola	cytosol, nucleus, plasma membrane	23.93	19.74
CDY44630	Canola	plasma membrane	24.38	19.67
CDY18351	Canola	plastid	22.57	19.65
CDX74865	Canola	plasma membrane	24.38	19.57
CDY07919	Canola	cytosol, nucleus, plasma membrane	23.25	19.51
CDX93284	Canola	cytosol, nucleus, plasma membrane	23.93	19.41
CDY40336	Canola	plasma membrane	23.93	19.38
CDX80808	Canola	plasma membrane	11.06	19.37
CDY06942	Canola	cytosol, peroxisome, plasma membrane	23.25	19.29
CDY67831	Canola	cytosol, peroxisome, plasma membrane	23.02	19.14
CDY10463	Canola	plasma membrane	23.25	18.86
CDY55126	Canola	plasma membrane	21.44	18.48
CDY55127	Canola	cytosol, plasma membrane, plastid	23.7	17.98
CDX73974	Canola	cytosol, nucleus, plasma membrane	16.48	17.85
CDX85489	Canola	vacuole	17.38	17.82
CDX80809	Canola	plasma membrane	23.7	17.71
CDY04048	Canola	plasma membrane	20.99	16.03

Protein Annotations

EnsemblPlants:CDY59097	EnsemblPlantsGene:GSBRNA2T00025553001	GO:A0A078J125	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:AA_transpt_TM	PANTHER:PTHR22950	PANTHER:PTHR22950:SF464	PFAM:PF01490	ProteinID:CDY59097	ProteinID:CDY59097.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EE4D31	UniProt:A0A078J125	MapMan:24.2.3.4.4	:

Description

BnaCnng34220DBnaCnng34220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J125]

Coordinates

chrLK033725:-:20130..21461

Molecular Weight (calculated)

47932.6 Da

IEP (calculated)

7.072

GRAVY (calculated)

0.769

Length

443 amino acids

Sequence
(BLAST)

001: MGFAKEASSS SSSSSSYSLK MPPPREDTPL LLGKSPPPLS SQFKTFANVF IAVVGAGVLG LPYAFKRTGW LMGVLLLLSV SVLTHHCMML LVHTRRRLDS
101: FNGGGFSKIG SFGDLGFAVC GSLGRLVVDL FIILSQAGFC VGYLIFIGTT LANIFDPDSP TSLRHQITRL GSEFLGLSSK SLYIWGCFPF QLGLNSIKTL
201: THLAPLSIFA DVVDLAAMAV VVVEDSIIIL KQRPDVVAFG GFSLFLYGMG VAVYSFEGVG MVLPLESEMK DKDKFGKVLA LGMGFISLIY IAFGFLGYLA
301: FGEDTMDIIT GNLGAGLIST IVQLGLCINL FFTFPLMMNP VFEIVERRFS GGMYSAWLRW LLVLAVTLVA LFVPNFTDFL SLVGSSTCCI LGFVLPALFH
401: LLVFKEEMGW KQWSLDMAIV GLGVVLAVSG TWSSLSEIFS VKV

Best Arabidopsis Sequence Match ( AT4G38250.1 )
(BLAST)

001: MGFQNEASSS SYTLKIPPPA REDSPLLGKG PPLSSQFKTF ANVFIAVVGA GVLGLPYAFK RTGWLMGVLL LVSVSVLTHH CMMLLVYTRR KLDSFNAGIS
101: KIGSFGDLGF AVCGSLGRIV VDLFIILSQA GFCVGYLIFI GTTLANLSDP ESPTSLRHQF TRLGSEFLGV SSKSLYIWGC FPFQLGLNSI KTLTHLAPLS
201: IFADIVDLGA MAVVIVEDSM IILKQRPDVV AFGGMSLFLY GMGVAVYSFE GVGMVLPLES EMKDKDKFGK VLALGMGFIS LIYIAFGILG YLAFGEDTMD
301: IITANLGAGL VSTVVQLGLC INLFFTFPLM MNPVFEIVER RFSRGMYSAW LRWVLVLAVT LVALFVPNFA DFLSLVGSST CCVLGFVLPA LFHLLVFKEE
401: MGWLQWSSDT AIVVLGVVLA VSGTWSSLSE IFSVKV

Arabidopsis Description

AVT3CAmino acid transporter AVT3C [Source:UniProtKB/Swiss-Prot;Acc:Q9SVG0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.