Factsheet for Zm00001d026121_P001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol, plasma membrane

Predictor Summary:

mitochondrion 1
cytosol 1
plastid 2
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d016570_P001
Zm00001d050563_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G65990.1	Zm00001d016570_P001	AT1G27300.1	21798944
AT5G65990.1	Zm00001d050563_P001	AT1G27300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES12671	Sorghum	plastid	92.12	91.94
OQU82139	Sorghum	peroxisome	77.37	89.28
Os04t0565500-01	Rice	cytosol, plasma membrane, plastid	74.75	87.06
TraesCS2B01G421800.1	Wheat	plasma membrane	72.32	84.63
TraesCS2D01G400900.1	Wheat	plasma membrane	72.12	84.4
TraesCS2A01G403800.1	Wheat	endoplasmic reticulum, plasma membrane, plastid, vacuole	72.12	84.4
Zm00001d017557_P001	Maize	plastid	68.28	78.24
GSMUA_Achr1P02810_001	Banana	cytosol, plasma membrane, vacuole	57.58	72.33
GSMUA_Achr5P11060_001	Banana	plasma membrane	54.75	68.43
GSMUA_AchrUn_...	Banana	plasma membrane, plastid, vacuole	55.35	65.55
GSMUA_Achr4P25490_001	Banana	plasma membrane	51.72	65.31
VIT_07s0031g02140.t01	Wine grape	plasma membrane	53.94	63.27
VIT_03s0038g03900.t01	Wine grape	plasma membrane	53.13	61.74
PGSC0003DMT400045065	Potato	plasma membrane, plastid	51.52	60.57
CDY70145	Canola	plasma membrane	49.09	60.3
CDY21456	Canola	plasma membrane	49.09	60.3
Bra000591.1-P	Field mustard	plasma membrane	48.89	59.9
AT2G42005.1	Thale cress	plasma membrane	49.9	59.81
PGSC0003DMT400048045	Potato	plasma membrane	51.52	59.72
Solyc02g082510.1.1	Tomato	plasma membrane	51.11	59.53
PGSC0003DMT400086252	Potato	plasma membrane	51.11	59.53
Solyc03g032090.1.1	Tomato	plasma membrane	50.91	59.02
AT4G38250.1	Thale cress	plasma membrane	51.72	58.72
PGSC0003DMT400094217	Potato	plasma membrane	48.89	57.35
CDY59097	Canola	plastid	51.31	57.34
AT5G65990.1	Thale cress	endoplasmic reticulum, peroxisome, plasma membrane, plastid	49.29	57.14
Bra029326.1-P	Field mustard	peroxisome	49.29	57.01
CDY42861	Canola	peroxisome	49.09	56.78
CDY54797	Canola	plastid	50.91	56.63
KRH39423	Soybean	plasma membrane	48.69	56.31
Bra033558.1-P	Field mustard	plasma membrane	40.61	56.15
KRH28932	Soybean	cytosol, plasma membrane	40.81	56.11
CDY47026	Canola	peroxisome, plastid	48.69	55.92
Solyc02g082520.1.1	Tomato	cytosol, peroxisome, plasma membrane	45.05	53.22
Solyc10g048180.1.1	Tomato	plasma membrane	45.45	52.69
PGSC0003DMT400033422	Potato	plasma membrane	45.05	51.62
Zm00001d019225_P001	Maize	plasma membrane	31.92	36.92
Zm00001d044994_P001	Maize	cytosol, plasma membrane, vacuole	8.69	28.1
Zm00001d003422_P001	Maize	cytosol, plasma membrane, vacuole	21.82	23.58
Zm00001d037229_P001	Maize	plasma membrane	18.38	22.81
Zm00001d043640_P001	Maize	plasma membrane	7.07	20.71
Zm00001d031629_P001	Maize	cytosol, plasma membrane, vacuole	7.27	20.0
Zm00001d018340_P001	Maize	cytosol, peroxisome, plasma membrane	20.61	19.32
Zm00001d004633_P001	Maize	plasma membrane	17.78	18.97
Zm00001d032325_P001	Maize	mitochondrion, plasma membrane, vacuole	10.3	18.89
Zm00001d052063_P003	Maize	plasma membrane	20.2	18.52
Zm00001d018336_P002	Maize	plasma membrane	20.4	18.46
Zm00001d004340_P002	Maize	plasma membrane	20.61	17.89
Zm00001d048577_P001	Maize	cytosol, nucleus, plasma membrane	19.8	17.28
Zm00001d030751_P001	Maize	plasma membrane	20.4	15.98
Zm00001d041534_P002	Maize	plasma membrane	19.39	15.76
Zm00001d037057_P001	Maize	cytosol, nucleus, plasma membrane	15.56	14.64
Zm00001d044387_P001	Maize	nucleus	20.81	12.03

Protein Annotations

EnsemblPlants:Zm00001d026121_P001	EnsemblPlants:Zm00001d026121_T001	EnsemblPlantsGene:Zm00001d026121	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:AA_transpt_TM	PANTHER:PTHR22950	PANTHER:PTHR22950:SF259	PFAM:PF01490	ProteinID:AQK45678.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI0001D83E9E	UniProt:K7TMV8	MapMan:24.2.3.4.4	:	:

Description

Amino acid transport protein

Coordinates

chr10:+:138895014..138896501

Molecular Weight (calculated)

52403.6 Da

IEP (calculated)

8.373

GRAVY (calculated)

0.651

Length

495 amino acids

Sequence
(BLAST)

001: MSTALLKEWS TGHGASPTAA TTSTKRETAR HEAPQIPHFY GHQQATPHSQ SPQQLVPCSA RLIQRLNPQA MGFDKEASSS SSRLDAAPLL PQHGGGGAGG
101: HLSSQPKTFA NVFIAVVGSG VLGLPYTFSR TGWAAGTLLL LAVAALTFHC MMLLVAARRR IADAHPKIAS FGDLGHAIYG APGRHAVDAM LVLSQASFCV
201: GYLIFISNTM AHLYPIAIGA QSPASPLLTA KALFIWAMLP FQLGLNSIRT LTLLAPLSIF ADVVDLGAMG VVLGQDASVW LADRPPVFAF AGPAQLLYGL
301: GVAVYAFEGI GMVLPLEAEA ADKRRFGATL ALSMAFIAVM YGLFGAMGYL AFGAATRDII TTNLGTGWLS VLVQLGLCIN LFFTMPVMMN PVYEVAERLL
401: CGKRYAWWLR WILVVLVGLL AMLVPNFADF LSLVGSSVCV VLGFVLPAVF HLKVFGTEIG WAGLVADVAI IVTGIALAVS GTWTSLVQIF SSSDL

Best Arabidopsis Sequence Match ( AT4G38250.1 )
(BLAST)

001: MGFQNEASSS SYTLKIPPPA REDSPLLGKG PPLSSQFKTF ANVFIAVVGA GVLGLPYAFK RTGWLMGVLL LVSVSVLTHH CMMLLVYTRR KLDSFNAGIS
101: KIGSFGDLGF AVCGSLGRIV VDLFIILSQA GFCVGYLIFI GTTLANLSDP ESPTSLRHQF TRLGSEFLGV SSKSLYIWGC FPFQLGLNSI KTLTHLAPLS
201: IFADIVDLGA MAVVIVEDSM IILKQRPDVV AFGGMSLFLY GMGVAVYSFE GVGMVLPLES EMKDKDKFGK VLALGMGFIS LIYIAFGILG YLAFGEDTMD
301: IITANLGAGL VSTVVQLGLC INLFFTFPLM MNPVFEIVER RFSRGMYSAW LRWVLVLAVT LVALFVPNFA DFLSLVGSST CCVLGFVLPA LFHLLVFKEE
401: MGWLQWSSDT AIVVLGVVLA VSGTWSSLSE IFSVKV

Arabidopsis Description

AVT3CAmino acid transporter AVT3C [Source:UniProtKB/Swiss-Prot;Acc:Q9SVG0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.