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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • plastid 1
  • plasma membrane 4
  • extracellular 1
  • golgi 1
  • endoplasmic reticulum 1
  • vacuole 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, nucleus, secretory
BaCelLo:nucleus
ChloroP:plastid
MultiLoc:plasma membrane
Plant-mPloc:plasma membrane
PProwler:secretory
WoLF PSORT:cytosol
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400084737

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G65990.1 PGSC0003DMT400084737 AT1G27300.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc02g082520.1.1 Tomato cytosol, peroxisome, plasma membrane 88.63 89.26
PGSC0003DMT400086252 Potato plasma membrane 74.64 74.12
PGSC0003DMT400045065 Potato plasma membrane, plastid 71.33 71.5
PGSC0003DMT400048045 Potato plasma membrane 72.27 71.43
VIT_07s0031g02140.t01 Wine grape plasma membrane 69.43 69.43
Os04t0565500-01 Rice cytosol, plasma membrane, plastid 59.72 59.29
KRH28932 Soybean cytosol, plasma membrane 50.0 58.61
Bra029326.1-P Field mustard peroxisome 59.24 58.41
CDY42861 Canola peroxisome 59.24 58.41
AT5G65990.1 Thale cress endoplasmic reticulum, peroxisome, plasma membrane, plastid 58.53 57.85
TraesCS6B01G271500.1 Wheat plasma membrane 57.58 57.72
TraesCS6A01G254100.1 Wheat plasma membrane 57.58 57.72
CDY47026 Canola peroxisome, plastid 58.53 57.31
TraesCS6D01G235500.1 Wheat plasma membrane 57.11 57.24
TraesCS2D01G400900.1 Wheat plasma membrane 57.35 57.21
TraesCS2B01G421800.1 Wheat plasma membrane 57.35 57.21
HORVU6Hr1G064740.1 Barley plasma membrane 56.87 57.01
KRH39423 Soybean plasma membrane 57.35 56.54
TraesCS2A01G403800.1 Wheat endoplasmic reticulum, plasma membrane, plastid, vacuole 56.64 56.5
GSMUA_Achr1P02810_001 Banana cytosol, plasma membrane, vacuole 52.61 56.35
EES07473 Sorghum plasma membrane 56.87 56.34
GSMUA_Achr5P11060_001 Banana plasma membrane 52.84 56.31
Zm00001d017557_P001 Maize plastid 57.58 56.25
GSMUA_Achr4P25490_001 Banana plasma membrane 50.95 54.85
PGSC0003DMT400033422 Potato plasma membrane 55.69 54.4
OQU82139 Sorghum peroxisome 55.21 54.31
GSMUA_AchrUn_... Banana plasma membrane, plastid, vacuole 53.79 54.31
Os02t0670900-02 Rice endoplasmic reticulum, plasma membrane, plastid 58.06 50.31
EES12671 Sorghum plastid 58.06 49.4
Zm00001d026121_P001 Maize cytosol, peroxisome, plasma membrane, plastid 57.35 48.89
PGSC0003DMT400076795 Potato plasma membrane 19.67 24.7
PGSC0003DMT400008751 Potato plasma membrane 24.41 24.18
PGSC0003DMT400019843 Potato peroxisome, plasma membrane, plastid, vacuole 8.53 24.0
PGSC0003DMT400082135 Potato plasma membrane 5.69 23.53
PGSC0003DMT400076791 Potato plasma membrane 21.33 21.43
PGSC0003DMT400055694 Potato extracellular, plasma membrane 18.48 21.14
PGSC0003DMT400080507 Potato peroxisome 23.46 18.93
PGSC0003DMT400028760 Potato cytosol, peroxisome, plasma membrane 22.99 18.34
PGSC0003DMT400036273 Potato cytosol, nucleus, plasma membrane 16.59 15.77
PGSC0003DMT400019190 Potato cytosol, nucleus, plasma membrane 21.8 15.28
Protein Annotations
EnsemblPlants:PGSC0003DMT400094217EnsemblPlantsGene:PGSC0003DMG400043788EntrezGene:102606363GO:GO:0005575GO:GO:0016020GO:GO:0016021
InterPro:AA_transpt_TMPANTHER:PTHR22950PANTHER:PTHR22950:SF464PFAM:PF01490PGSC:PGSC0003DMG400043788RefSeq:XP_006340956.1
SEG:segTMHMM:TMhelixUniParc:UPI000296DBC4UniProt:M1DTN6MapMan:24.2.3.4.4:
Description
Amino acid transporter [Source:PGSC_GENE;Acc:PGSC0003DMG400043788]
Coordinates
chr2:+:38387386..38388654
Molecular Weight (calculated)
46452.4 Da
IEP (calculated)
4.848
GRAVY (calculated)
0.750
Length
422 amino acids
Sequence
(BLAST)
001: MGFETDEASS STHVPGEDVP FLGQNQQLSS PLKTFANIFM SFVGAGVLGL PYTFKRTGWV MGSLLIISIA TLSYYCMMLL VYCRRKLESQ FEGAKISSFG
101: DLGFAVCGPI GRFVVDVMIV LSQACFSVGY MIFIGNTLVY LFNSSVIETN PRILGFSPKS VYIWSCFPFQ LGLNSIPTLT LLAPLSIFAE IVDLGALGVV
201: MVEDVLIYLK NRPSLEMCGG FSVFFYGLGV AVFAFEGMGM VLPLESETRD KNKFGKILGL SVAFVAFLYG AFGALGYFAF GEETKDIITT NFRQGSLSSL
301: VQLGLCINLF LAFPLMMNPV YEVMERRFYE GRYCLWLRWL VVLTVCCVAL TVPNFADFMS LVGSSVSVVL GFVLPAFFHL IVFKDELGWY SLALDAAFIF
401: MGTAFAVYGT YSSLAKIFSE LA
Best Arabidopsis Sequence Match ( AT2G42005.1 )
(BLAST)
001: MGLEEQGRAR EDTPLLGKGR PLSSKFKTFA NVFIAIVGAG VLGLPYAFKR TGWLMGLLTL FSVAALINHC MMLLVHIRRK LGVSNIGSFG DLGFAACGNL
101: GRFVVDILII LSQAGFCVGY LIFIGNTLAN LSKPTKSTTL MSLRHLMGVS PKSLYIWGCF PFQLGLNSIK TLTHLAPLSI FADVVDLGAM AVVIVEDIKI
201: TVVQRPQVVA FGGMSVFFYG MGVAVYAFEG VGMVLPLESE TKDKDKFGKV LALSMLFIAV MYGSFGVLGY MAFGDDTMDI ITANLGAGVV SSLVQLGLCI
301: NLFFTFPLMM NPVFEIVERR FWSGMYCVWL RWLLVLAVTL VALLVPNFAD FLSLVGSSVC CALGFVLPSL FHLMVFKDEM EWKQRALDVG ILLLGVILGV
401: SGTWSSLTEI FQE
Arabidopsis Description
AVT3BAmino acid transporter AVT3B [Source:UniProtKB/Swiss-Prot;Acc:F4ILY9]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.