Factsheet for PGSC0003DMT400019190

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plasma membrane

Predictor Summary:

nucleus 2
cytosol 1
plasma membrane 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g008440.1.1	Tomato	cytosol, nucleus, plasma membrane	86.21	93.51
PGSC0003DMT400036273	Potato	cytosol, nucleus, plasma membrane	55.65	75.45
VIT_13s0019g04660.t01	Wine grape	cytosol, nucleus, plasma membrane	65.61	70.16
KRG91942	Soybean	plasma membrane	61.96	68.57
Bra007103.1-P	Field mustard	plasma membrane	44.35	67.77
CDY18351	Canola	plastid	56.64	66.99
AT2G39130.2	Thale cress	cytosol, nucleus, plasma membrane	60.96	66.73
KRH34828	Soybean	plasma membrane	62.13	66.67
CDY44630	Canola	plasma membrane	60.3	66.12
Bra005061.1-P	Field mustard	cytosol, nucleus, plasma membrane	50.5	65.94
CDX93284	Canola	cytosol, nucleus, plasma membrane	59.47	65.57
CDX74865	Canola	plasma membrane	59.97	65.4
Bra017088.1-P	Field mustard	cytosol, nucleus, plasma membrane	59.3	65.38
CDX78269	Canola	plasma membrane	56.81	64.53
CDX73443	Canola	cytosol, nucleus, plasma membrane	56.48	63.31
AT3G54830.1	Thale cress	nucleus	55.32	60.99
GSMUA_Achr1P03170_001	Banana	cytosol, nucleus, plasma membrane	56.81	60.75
GSMUA_Achr5P10650_001	Banana	cytosol, nucleus, plasma membrane	53.49	58.12
Os04t0201800-00	Rice	plasma membrane, plastid	37.71	56.47
TraesCSU01G023100.1	Wheat	cytosol, peroxisome, plasma membrane	51.99	56.19
TraesCS2B01G065200.1	Wheat	cytosol, peroxisome, plasma membrane	51.99	56.19
KRG99573	Soybean	cytosol, nucleus, plasma membrane	9.97	56.07
Zm00001d004340_P002	Maize	plasma membrane	52.99	55.96
TraesCS2A01G052500.1	Wheat	plasma membrane	51.49	55.96
HORVU2Hr1G008090.4	Barley	cytosol, peroxisome, plasma membrane	51.99	55.69
TraesCS6B01G007400.1	Wheat	cytosol, peroxisome, plasma membrane	51.49	55.06
TraesCS6A01G002400.1	Wheat	cytosol, nucleus, plasma membrane	51.66	54.95
Os02t0101000-01	Rice	cytosol, nucleus, plasma membrane	51.99	54.82
TraesCS6D01G003200.1	Wheat	cytosol, nucleus, plasma membrane	51.66	54.56
EES06091	Sorghum	plasma membrane	51.33	53.65
Zm00001d048577_P001	Maize	cytosol, nucleus, plasma membrane	50.17	53.26
HORVU6Hr1G001480.1	Barley	plasma membrane	51.99	52.69
Zm00001d044994_P001	Maize	cytosol, plasma membrane, vacuole	13.12	51.63
EER89806	Sorghum	cytosol, nucleus, plasma membrane	48.84	51.49
Zm00001d043640_P001	Maize	plasma membrane	13.79	49.11
Zm00001d037057_P001	Maize	cytosol, nucleus, plasma membrane	42.86	49.05
KXG25873	Sorghum	plasma membrane	52.99	48.48
PGSC0003DMT400028760	Potato	cytosol, peroxisome, plasma membrane	41.53	47.26
KRH38592	Soybean	endoplasmic reticulum	17.94	45.19
PGSC0003DMT400019843	Potato	peroxisome, plasma membrane, plastid, vacuole	10.47	42.0
PGSC0003DMT400080507	Potato	peroxisome	36.38	41.87
PGSC0003DMT400076791	Potato	plasma membrane	27.91	40.0
PGSC0003DMT400076795	Potato	plasma membrane	20.93	37.5
PGSC0003DMT400008751	Potato	plasma membrane	24.58	34.74
PGSC0003DMT400082135	Potato	plasma membrane	5.65	33.33
PGSC0003DMT400055694	Potato	extracellular, plasma membrane	18.94	30.89
PGSC0003DMT400086252	Potato	plasma membrane	15.78	22.35
PGSC0003DMT400048045	Potato	plasma membrane	15.61	22.01
PGSC0003DMT400094217	Potato	plasma membrane	15.28	21.8
PGSC0003DMT400045065	Potato	plasma membrane, plastid	14.78	21.14
PGSC0003DMT400033422	Potato	plasma membrane	14.45	20.14

Protein Annotations

EnsemblPlants:PGSC0003DMT400019190	EnsemblPlantsGene:PGSC0003DMG400007424	EntrezGene:102600215	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:AA_transpt_TM	PANTHER:PTHR22950	PANTHER:PTHR22950:SF240	PFAM:PF01490	PGSC:PGSC0003DMG400007424	SEG:seg
TMHMM:TMhelix	UniParc:UPI0002959653	UniProt:M1ABQ3	MapMan:24.2.3.4.7	:	:

Description

Amino acid transporter [Source:PGSC_GENE;Acc:PGSC0003DMG400007424]

Coordinates

chr11:-:3581626..3586016

Molecular Weight (calculated)

66623.5 Da

IEP (calculated)

7.544

GRAVY (calculated)

0.135

Length

602 amino acids

Sequence
(BLAST)

001: MRNSVSDHSF YIESDEEDDH QEKHLDKSEE NGDGNESDSS NYSNDDDDNH NDRLESKPSS YNPAWPQSYR QSMDIYSSVP SPSLTFLGTP SLTRLGSSFL
101: ASSLTRRHTP EVLPSLHKPL ISQAEEDQPP QRRSSHTLLP PLPSRRSAIK KFPDEKSVAH ELPVSRQSSY GQGVLNGINV LCGVGILSTP YAVKEGGWAG
201: LSLLFIFGLL SYYTGILLRY CLDSQPGLET YPDIGQAAFG TVGRIIISII LYVELYSCCV EYIILEGDNL SALFPNAHLN LGGYQLDARH LFALVTTLAV
301: LPTVWLRDLT VLSYISAGGV IASVMVVICL YWLGLVDHVG TQSKETVLNL SSLPVAIGLY GYCYSGHAVF PNIYTSLEKR SQFPAVLFTS FAIVTALYAG
401: AAVMGYMMFG DSAESQFTLN LPTDLVASKI AFWTTIVNPF TKYALTMAPV AMSLEELIPS NHTKSHMYSI LIRTALVMST LFVALKIPFF GKLSCYNVLI
501: NIVFLPSKRK KVSILSTDSP AGFVMALIGS FFTMLVTLIL PCACFLRILK GKTSPIQVQE KFLYGRVRYE GKCFPRKKFS SIPNTPYIYL KPFVVSIVSR
601: FK

Best Arabidopsis Sequence Match ( AT2G39130.1 )
(BLAST)

001: MNHVPSDQSF YIESEDEDDR KDYVEEDGGS HSDSSDDVYD ENQAHIKPSS YTTAWPQSYR QSIDLYSSVP SPGIGFLGNN SMTRFGSSFL SSGLIRRHTP
101: ESLPTVTKPL LEEQADEQAL PKHRLSSQGL LSPIPSRRGS MRKDEKSSMV SHEIPMSRNS SYGQAVLNGL NVLCGVGILS TPYAAKEGGW LGLMILFVYG
201: LLSFYTGILL RYCLDSESDL ETYPDIGQAA FGTTGRIFVS IVLYLELYAC CVEYIILESD NLSSLYPNAA LSIGGFQLDA RHLFALLTTL AVLPTVWLRD
301: LSVLSYISAG GVIASVLVVL CLFWIGLVDE VGIHSKGTTL NLSTLPVAIG LYGYCYSGHA VFPNIYTSMA KPSQYPAVLL TCFGICTLMY AGVAVMGYTM
401: FGESTQSQFT LNLPQDLIAT KIAVWTTVVN PFTKYALTIS PVAMSLEELI PSRHIRSHWY AIGIRTLLVF STLLVGLAIP FFGLVMSLIG SLLTMLVTLI
501: LPPACFLSIV RRKVTPTQMM LCVLIIIVGA ISSVIGSYSA LSKIVEKLTN

Arabidopsis Description

AVT1CAmino acid transporter AVT1C [Source:UniProtKB/Swiss-Prot;Acc:F4IUW3]
SUBAcon: [cytosol,nucleus,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.