Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| endoplasmic reticulum:
28499913
|
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g063030.2.1 | Tomato | plasma membrane | 38.91 | 39.57 |
| Bra007103.1-P | Field mustard | plasma membrane | 46.03 | 27.92 |
| KRH40411 | Soybean | plasma membrane | 28.45 | 25.28 |
| KRG91942 | Soybean | plasma membrane | 56.49 | 24.82 |
| PGSC0003DMT400036273 | Potato | cytosol, nucleus, plasma membrane | 45.19 | 24.32 |
| CDY18351 | Canola | plastid | 51.05 | 23.97 |
| Bra005061.1-P | Field mustard | cytosol, nucleus, plasma membrane | 44.77 | 23.21 |
| KRH34828 | Soybean | plasma membrane | 54.39 | 23.17 |
| CDX73443 | Canola | cytosol, nucleus, plasma membrane | 49.79 | 22.16 |
| AT2G39130.2 | Thale cress | cytosol, nucleus, plasma membrane | 50.63 | 22.0 |
| VIT_13s0019g04660.t01 | Wine grape | cytosol, nucleus, plasma membrane | 51.05 | 21.67 |
| CDX74865 | Canola | plasma membrane | 49.79 | 21.56 |
| CDX78269 | Canola | plasma membrane | 47.7 | 21.51 |
| CDY44630 | Canola | plasma membrane | 49.37 | 21.49 |
| KRH16006 | Soybean | cytosol | 30.54 | 21.41 |
| KRH33248 | Soybean | cytosol, nucleus, plasma membrane | 48.54 | 21.4 |
| AT3G54830.1 | Thale cress | nucleus | 48.54 | 21.25 |
| CDX93284 | Canola | cytosol, nucleus, plasma membrane | 48.54 | 21.25 |
| KRH01177 | Soybean | plasma membrane | 38.08 | 21.21 |
| KRH40095 | Soybean | plasma membrane | 37.66 | 21.13 |
| Bra017088.1-P | Field mustard | cytosol, nucleus, plasma membrane | 48.12 | 21.06 |
| KRH71649 | Soybean | cytosol, nucleus, plasma membrane | 47.28 | 20.85 |
| KRG99991 | Soybean | cytosol, nucleus, peroxisome | 24.69 | 20.7 |
| KRH30199 | Soybean | extracellular, plasma membrane | 32.22 | 20.64 |
| KRH40094 | Soybean | plasma membrane | 36.4 | 20.37 |
| KRG89633 | Soybean | plasma membrane | 33.47 | 19.66 |
| Solyc11g008440.1.1 | Tomato | cytosol, nucleus, plasma membrane | 45.61 | 19.64 |
| KRG98240 | Soybean | plasma membrane | 34.73 | 18.99 |
| KRH30194 | Soybean | plasma membrane | 34.31 | 18.76 |
| PGSC0003DMT400019190 | Potato | cytosol, nucleus, plasma membrane | 45.19 | 17.94 |
| KRG98784 | Soybean | plasma membrane | 26.36 | 17.12 |
| KRG95106 | Soybean | cytosol, peroxisome, plasma membrane | 31.8 | 16.52 |
| KRH77523 | Soybean | cytosol, nucleus, plasma membrane | 32.64 | 16.49 |
| KRH71933 | Soybean | cytosol, peroxisome, plasma membrane | 30.54 | 16.37 |
| KRH31531 | Soybean | mitochondrion | 29.29 | 15.49 |
| KRG97383 | Soybean | mitochondrion | 29.71 | 15.04 |
| KRH58803 | Soybean | mitochondrion | 28.45 | 14.78 |
| KRH75803 | Soybean | mitochondrion | 19.25 | 14.7 |
| KRH33027 | Soybean | plasma membrane | 35.56 | 14.58 |
| KRH66774 | Soybean | plasma membrane | 14.23 | 12.73 |
| Solyc03g063050.1.1 | Tomato | extracellular, plasma membrane | 13.81 | 12.41 |
| KRH27948 | Soybean | plasma membrane | 8.79 | 12.14 |
| KRH68062 | Soybean | plasma membrane | 19.67 | 11.19 |
| KRH28932 | Soybean | cytosol, plasma membrane | 16.74 | 11.11 |
| KRG96325 | Soybean | plasma membrane | 19.25 | 10.9 |
| KRH39423 | Soybean | plasma membrane | 16.74 | 9.35 |
| KRG99573 | Soybean | cytosol, nucleus, plasma membrane | 3.77 | 8.41 |
| Solyc03g063040.2.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 3.35 | 6.5 |
Protein Annotations
| EMBL:ACUP02005853 | EnsemblPlants:KRH38592 | EnsemblPlantsGene:GLYMA_09G145500 | GO:GO:0003333 | GO:GO:0003674 | GO:GO:0005215 |
| GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015171 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:AA_transpt_TM | PANTHER:PTHR22950 | PANTHER:PTHR22950:SF240 | PFAM:PF01490 | ProteinID:KRH38592 | ProteinID:KRH38592.1 |
| TMHMM:TMhelix | UniParc:UPI0006ED6905 | UniProt:A0A0R0I8I3 | MapMan:35.1 | : | : |
Description
hypothetical protein
Coordinates
chr9:-:36118430..36120582
Molecular Weight (calculated)
27389.1 Da
IEP (calculated)
9.659
GRAVY (calculated)
0.489
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MARASTGPLL VLNNRSSPIP ISLSFVILLI YGYTKGHLVF VWYFLQYQGL RCSCNHQISI YINLKLWDKL SKIEHLVCCQ KISRFKYLHL LVVASILVVL
101: CLLWVGIEDV GFHSKGTTLN LATLPVAVGL YGYCYFGHAV FPNIYTSMTN PNQFPWNPLS MVNWKRTAVL GYTMFGEAIL SQFTLNMPKE LVATKIVVWT
201: TVVNPFTKYP LYIRACMSLY IPWKMSFNIR NDFVSILHL
101: CLLWVGIEDV GFHSKGTTLN LATLPVAVGL YGYCYFGHAV FPNIYTSMTN PNQFPWNPLS MVNWKRTAVL GYTMFGEAIL SQFTLNMPKE LVATKIVVWT
201: TVVNPFTKYP LYIRACMSLY IPWKMSFNIR NDFVSILHL
001: MNHVPSDQSF YIESEDEDDR KDYVEEDGGS HSDSSDDVYD ENQAHIKPSS YTTAWPQSYR QSIDLYSSVP SPGIGFLGNN SMTRFGSSFL SSGLIRRHTP
101: ESLPTVTKPL LEEQADEQAL PKHRLSSQGL LSPIPSRRGS MRKDEKSSMV SHEIPMSRNS SYGQAVLNGL NVLCGVGILS TPYAAKEGGW LGLMILFVYG
201: LLSFYTGILL RYCLDSESDL ETYPDIGQAA FGTTGRIFVS IVLYLELYAC CVEYIILESD NLSSLYPNAA LSIGGFQLDA RHLFALLTTL AVLPTVWLRD
301: LSVLSYISAG GVIASVLVVL CLFWIGLVDE VGIHSKGTTL NLSTLPVAIG LYGYCYSGHA VFPNIYTSMA KPSQYPAVLL TCFGICTLMY AGVAVMGYTM
401: FGESTQSQFT LNLPQDLIAT KIAVWTTVVN PFTKYALTIS PVAMSLEELI PSRHIRSHWY AIGIRTLLVF STLLVGLAIP FFGLVMSLIG SLLTMLVTLI
501: LPPACFLSIV RRKVTPTQMM LCVLIIIVGA ISSVIGSYSA LSKIVEKLTN
101: ESLPTVTKPL LEEQADEQAL PKHRLSSQGL LSPIPSRRGS MRKDEKSSMV SHEIPMSRNS SYGQAVLNGL NVLCGVGILS TPYAAKEGGW LGLMILFVYG
201: LLSFYTGILL RYCLDSESDL ETYPDIGQAA FGTTGRIFVS IVLYLELYAC CVEYIILESD NLSSLYPNAA LSIGGFQLDA RHLFALLTTL AVLPTVWLRD
301: LSVLSYISAG GVIASVLVVL CLFWIGLVDE VGIHSKGTTL NLSTLPVAIG LYGYCYSGHA VFPNIYTSMA KPSQYPAVLL TCFGICTLMY AGVAVMGYTM
401: FGESTQSQFT LNLPQDLIAT KIAVWTTVVN PFTKYALTIS PVAMSLEELI PSRHIRSHWY AIGIRTLLVF STLLVGLAIP FFGLVMSLIG SLLTMLVTLI
501: LPPACFLSIV RRKVTPTQMM LCVLIIIVGA ISSVIGSYSA LSKIVEKLTN
Arabidopsis Description
AVT1CAmino acid transporter AVT1C [Source:UniProtKB/Swiss-Prot;Acc:F4IUW3]
SUBAcon: [plasma membrane,nucleus,cytosol]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.