Factsheet for Solyc11g008440.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
plasma membrane 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400019190	Potato	cytosol, nucleus, plasma membrane	93.51	86.21
Solyc03g063030.2.1	Tomato	plasma membrane	33.51	79.15
VIT_13s0019g04660.t01	Wine grape	cytosol, nucleus, plasma membrane	73.33	72.29
Bra007103.1-P	Field mustard	plasma membrane	49.91	70.3
KRG91942	Soybean	plasma membrane	68.83	70.22
CDY18351	Canola	plastid	63.24	68.96
AT2G39130.2	Thale cress	cytosol, nucleus, plasma membrane	68.29	68.91
Bra005061.1-P	Field mustard	cytosol, nucleus, plasma membrane	56.94	68.55
Solyc03g063040.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	15.14	68.29
KRH34828	Soybean	plasma membrane	69.01	68.27
CDY44630	Canola	plasma membrane	67.03	67.76
CDX74865	Canola	plasma membrane	67.03	67.39
CDX93284	Canola	cytosol, nucleus, plasma membrane	65.95	67.03
Bra017088.1-P	Field mustard	cytosol, nucleus, plasma membrane	65.77	66.85
CDX78269	Canola	plasma membrane	63.06	66.04
CDX73443	Canola	cytosol, nucleus, plasma membrane	62.52	64.62
KRG99573	Soybean	cytosol, nucleus, plasma membrane	12.25	63.55
GSMUA_Achr1P03170_001	Banana	cytosol, nucleus, plasma membrane	63.78	62.88
AT3G54830.1	Thale cress	nucleus	59.46	60.44
GSMUA_Achr5P10650_001	Banana	cytosol, nucleus, plasma membrane	60.0	60.11
TraesCS2B01G065200.1	Wheat	cytosol, peroxisome, plasma membrane	58.2	57.99
Zm00001d004340_P002	Maize	plasma membrane	59.46	57.89
TraesCSU01G023100.1	Wheat	cytosol, peroxisome, plasma membrane	58.02	57.81
TraesCS2A01G052500.1	Wheat	plasma membrane	57.66	57.76
HORVU2Hr1G008090.4	Barley	cytosol, peroxisome, plasma membrane	58.02	57.3
Zm00001d044994_P001	Maize	cytosol, plasma membrane, vacuole	15.68	56.86
Os04t0201800-00	Rice	plasma membrane, plastid	41.08	56.72
Os02t0101000-01	Rice	cytosol, nucleus, plasma membrane	58.02	56.39
TraesCS6B01G007400.1	Wheat	cytosol, peroxisome, plasma membrane	57.12	56.31
TraesCS6A01G002400.1	Wheat	cytosol, nucleus, plasma membrane	57.3	56.18
TraesCS6D01G003200.1	Wheat	cytosol, nucleus, plasma membrane	57.3	55.79
Solyc03g063050.1.1	Tomato	extracellular, plasma membrane	26.67	55.64
EES06091	Sorghum	plasma membrane	57.48	55.38
Zm00001d048577_P001	Maize	cytosol, nucleus, plasma membrane	56.22	55.03
Zm00001d043640_P001	Maize	plasma membrane	16.58	54.44
HORVU6Hr1G001480.1	Barley	plasma membrane	57.66	53.87
EER89806	Sorghum	cytosol, nucleus, plasma membrane	54.41	52.89
KXG25873	Sorghum	plasma membrane	59.64	50.3
Zm00001d037057_P001	Maize	cytosol, nucleus, plasma membrane	46.49	49.05
Solyc10g084830.1.1	Tomato	cytosol, peroxisome, plasma membrane	46.49	48.77
KRH38592	Soybean	endoplasmic reticulum	19.64	45.61
Solyc05g050440.2.1	Tomato	extracellular, plasma membrane, vacuole	13.87	45.03
Solyc05g053970.2.1	Tomato	plasma membrane	28.11	44.32
Solyc03g078150.2.1	Tomato	peroxisome	41.08	43.43
Solyc06g061260.1.1	Tomato	plasma membrane	14.59	41.97
Solyc06g061270.1.1	Tomato	cytosol, plasma membrane	15.68	41.43
Solyc03g013440.2.1	Tomato	plasma membrane	23.24	37.28
Solyc03g013160.2.1	Tomato	plasma membrane	27.75	36.15
Solyc09g098380.1.1	Tomato	plasma membrane	26.49	33.26
Solyc03g032090.1.1	Tomato	plasma membrane	18.56	24.12
Solyc02g082510.1.1	Tomato	plasma membrane	18.38	24.0
Solyc02g082520.1.1	Tomato	cytosol, peroxisome, plasma membrane	16.94	22.43
Solyc10g048180.1.1	Tomato	plasma membrane	17.12	22.25

Protein Annotations

EnsemblPlants:Solyc11g008440.1.1	EnsemblPlantsGene:Solyc11g008440.1	GO:GO:0003333	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0015171	GO:GO:0016020	GO:GO:0016021	InterPro:AA_transpt_TM
PANTHER:PTHR22950	PANTHER:PTHR22950:SF240	PFAM:PF01490	SEG:seg	TMHMM:TMhelix	UniParc:UPI000276A8D7
UniProt:K4D5A4	MapMan:24.2.3.4.7	:	:	:	:

Description

No Description!

Coordinates

chr11:+:2646308..2649734

Molecular Weight (calculated)

60738.5 Da

IEP (calculated)

6.226

GRAVY (calculated)

0.308

Length

555 amino acids

Sequence
(BLAST)

001: MRNSVSEHSF YIESDEEDDH QEKHLVKSEN GDGNESDSSN YSNDDDDDHN DRLESKPSSY NPAWPQSYRQ SMDIYSSVPS PSLTFLGTPS LTRLGSSFLA
101: SSLTRRHTPE VLPSLHKPLI SQAEEDQPPQ RRSSHTLLPP LPSRRSAIKK FPDEKSVAHE LPVSRQSSYG QGVLNGINVL CGVGILSTPY AVKEGGWAGL
201: SILFIFGVLS YYTGILLRYC LDSQPGLETY PDIGQAAFGT VGRIIISIIL YVELYSCCVE YIILEGDNLS ALFPNAHLNL GGCQLDARHL FALITSLAVL
301: PTVWLRDLTV LSYISAGGVI ASVMVVICLY WLGLVDHVGT QSTETVLNLS SLPVAIGLYG YCYSGHAVFP NIYTSLEKRS QFPAVLFTSF AIVTVLYAGA
401: AVMGYMMFGD SAQSQFTLNL PTDLVASKIA FWTTIVNPFT KYALTMAPVA MSLEELIPSN HTKSHMYSIL IRTALVMSTL FVALKIPFFA FVMALIGSFF
501: TMLVTLILPC ACFLRILKGK ISPIQVVTCI LIIIIGSISA VIGSYSALSK IIHSL

Best Arabidopsis Sequence Match ( AT2G39130.1 )
(BLAST)

001: MNHVPSDQSF YIESEDEDDR KDYVEEDGGS HSDSSDDVYD ENQAHIKPSS YTTAWPQSYR QSIDLYSSVP SPGIGFLGNN SMTRFGSSFL SSGLIRRHTP
101: ESLPTVTKPL LEEQADEQAL PKHRLSSQGL LSPIPSRRGS MRKDEKSSMV SHEIPMSRNS SYGQAVLNGL NVLCGVGILS TPYAAKEGGW LGLMILFVYG
201: LLSFYTGILL RYCLDSESDL ETYPDIGQAA FGTTGRIFVS IVLYLELYAC CVEYIILESD NLSSLYPNAA LSIGGFQLDA RHLFALLTTL AVLPTVWLRD
301: LSVLSYISAG GVIASVLVVL CLFWIGLVDE VGIHSKGTTL NLSTLPVAIG LYGYCYSGHA VFPNIYTSMA KPSQYPAVLL TCFGICTLMY AGVAVMGYTM
401: FGESTQSQFT LNLPQDLIAT KIAVWTTVVN PFTKYALTIS PVAMSLEELI PSRHIRSHWY AIGIRTLLVF STLLVGLAIP FFGLVMSLIG SLLTMLVTLI
501: LPPACFLSIV RRKVTPTQMM LCVLIIIVGA ISSVIGSYSA LSKIVEKLTN

Arabidopsis Description

AVT1CAmino acid transporter AVT1C [Source:UniProtKB/Swiss-Prot;Acc:F4IUW3]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.