Subcellular Localization
min:
: max
Winner_takes_all: extracellular, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- extracellular 3
- plasma membrane 4
- golgi 2
- endoplasmic reticulum 2
- vacuole 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400036273 | Potato | cytosol, nucleus, plasma membrane | 57.52 | 34.46 |
| Bra005061.1-P | Field mustard | cytosol, nucleus, plasma membrane | 50.38 | 29.07 |
| Solyc11g008440.1.1 | Tomato | cytosol, nucleus, plasma membrane | 55.64 | 26.67 |
| CDY18351 | Canola | plastid | 49.25 | 25.74 |
| Solyc06g061270.1.1 | Tomato | cytosol, plasma membrane | 20.3 | 25.71 |
| Bra017088.1-P | Field mustard | cytosol, nucleus, plasma membrane | 50.38 | 24.54 |
| CDX93284 | Canola | cytosol, nucleus, plasma membrane | 50.38 | 24.54 |
| VIT_13s0019g04660.t01 | Wine grape | cytosol, nucleus, plasma membrane | 51.88 | 24.51 |
| CDY44630 | Canola | plasma membrane | 50.38 | 24.41 |
| CDX78269 | Canola | plasma membrane | 48.5 | 24.34 |
| CDX74865 | Canola | plasma membrane | 50.38 | 24.28 |
| CDX73443 | Canola | cytosol, nucleus, plasma membrane | 48.87 | 24.21 |
| AT2G39130.2 | Thale cress | cytosol, nucleus, plasma membrane | 50.0 | 24.18 |
| Os04t0201800-00 | Rice | plasma membrane, plastid | 36.47 | 24.13 |
| AT3G54830.1 | Thale cress | nucleus | 48.5 | 23.63 |
| KRG91942 | Soybean | plasma membrane | 46.99 | 22.98 |
| Bra007103.1-P | Field mustard | plasma membrane | 33.83 | 22.84 |
| KRH34828 | Soybean | plasma membrane | 48.12 | 22.82 |
| Solyc03g063030.2.1 | Tomato | plasma membrane | 19.92 | 22.55 |
| GSMUA_Achr5P10650_001 | Banana | cytosol, nucleus, plasma membrane | 46.62 | 22.38 |
| GSMUA_Achr1P03170_001 | Banana | cytosol, nucleus, plasma membrane | 46.24 | 21.85 |
| Os02t0101000-01 | Rice | cytosol, nucleus, plasma membrane | 44.36 | 20.67 |
| TraesCSU01G023100.1 | Wheat | cytosol, peroxisome, plasma membrane | 43.23 | 20.65 |
| TraesCS2B01G065200.1 | Wheat | cytosol, peroxisome, plasma membrane | 43.23 | 20.65 |
| TraesCS2A01G052500.1 | Wheat | plasma membrane | 42.86 | 20.58 |
| TraesCS6B01G007400.1 | Wheat | cytosol, peroxisome, plasma membrane | 43.23 | 20.43 |
| TraesCS6A01G002400.1 | Wheat | cytosol, nucleus, plasma membrane | 43.23 | 20.32 |
| HORVU2Hr1G008090.4 | Barley | cytosol, peroxisome, plasma membrane | 42.86 | 20.28 |
| Zm00001d004340_P002 | Maize | plasma membrane | 43.23 | 20.18 |
| TraesCS6D01G003200.1 | Wheat | cytosol, nucleus, plasma membrane | 42.86 | 20.0 |
| Zm00001d037057_P001 | Maize | cytosol, nucleus, plasma membrane | 39.47 | 19.96 |
| EES06091 | Sorghum | plasma membrane | 42.11 | 19.44 |
| Zm00001d048577_P001 | Maize | cytosol, nucleus, plasma membrane | 40.6 | 19.05 |
| HORVU6Hr1G001480.1 | Barley | plasma membrane | 42.11 | 18.86 |
| EER89806 | Sorghum | cytosol, nucleus, plasma membrane | 40.23 | 18.74 |
| Solyc10g084830.1.1 | Tomato | cytosol, peroxisome, plasma membrane | 37.22 | 18.71 |
| Solyc05g050440.2.1 | Tomato | extracellular, plasma membrane, vacuole | 12.03 | 18.71 |
| KXG25873 | Sorghum | plasma membrane | 42.86 | 17.33 |
| Solyc03g078150.2.1 | Tomato | peroxisome | 29.7 | 15.05 |
| KRH38592 | Soybean | endoplasmic reticulum | 12.41 | 13.81 |
| Solyc03g013160.2.1 | Tomato | plasma membrane | 21.05 | 13.15 |
| Solyc03g032090.1.1 | Tomato | plasma membrane | 17.29 | 10.77 |
| Solyc02g082510.1.1 | Tomato | plasma membrane | 16.92 | 10.59 |
| Solyc09g098380.1.1 | Tomato | plasma membrane | 17.29 | 10.41 |
| Solyc05g053970.2.1 | Tomato | plasma membrane | 13.53 | 10.23 |
| Solyc02g082520.1.1 | Tomato | cytosol, peroxisome, plasma membrane | 15.79 | 10.02 |
| Solyc10g048180.1.1 | Tomato | plasma membrane | 13.53 | 8.43 |
| Solyc03g013440.2.1 | Tomato | plasma membrane | 10.15 | 7.8 |
| Solyc03g063040.2.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 1.88 | 4.07 |
| Solyc06g061260.1.1 | Tomato | plasma membrane | 2.63 | 3.63 |
| Zm00001d044994_P001 | Maize | cytosol, plasma membrane, vacuole | 1.13 | 1.96 |
| KRG99573 | Soybean | cytosol, nucleus, plasma membrane | 0.75 | 1.87 |
| Zm00001d043640_P001 | Maize | plasma membrane | 1.13 | 1.78 |
Protein Annotations
| EnsemblPlants:Solyc03g063050.1.1 | EnsemblPlantsGene:Solyc03g063050.1 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:AA_transpt_TM |
| PANTHER:PTHR22950 | PANTHER:PTHR22950:SF240 | PFAM:PF01490 | SEG:seg | TMHMM:TMhelix | UniParc:UPI00027692B7 |
| UniProt:K4BH53 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr3:+:33065762..33068305
Molecular Weight (calculated)
29150.5 Da
IEP (calculated)
6.500
GRAVY (calculated)
0.341
Length
266 amino acids
Sequence
(BLAST)
(BLAST)
001: MIDHCKAFIS CAHGLSLLVN YIYQTLLLMH MNPIIHEDFS ALHIDLPILI ILGTSCRKSM DIYSNVSSPS LDFVGAPSLS LLGSSFFGSS LIRRNTPEIL
101: PSLHNPLIPP EEEEKEAHKH ISHDENPSND ARRIPISRQS SYGQAMVNGM NVLSGVGILS TPYAVKEGGW AGLSILFIFG VLSFYTGMLL RYCLDSQPGI
201: VTYPDIGQAA FGTTGRIFVS ALLTLTCLVS HIGDWRVIAS VLVVLCLYWA SLVDHVGFEN KGTVHY
101: PSLHNPLIPP EEEEKEAHKH ISHDENPSND ARRIPISRQS SYGQAMVNGM NVLSGVGILS TPYAVKEGGW AGLSILFIFG VLSFYTGMLL RYCLDSQPGI
201: VTYPDIGQAA FGTTGRIFVS ALLTLTCLVS HIGDWRVIAS VLVVLCLYWA SLVDHVGFEN KGTVHY
001: MNHVPSDQSF YIESEDEDDR KDYVEEDGGS HSDSSDDVYD ENQAHIKPSS YTTAWPQSYR QSIDLYSSVP SPGIGFLGNN SMTRFGSSFL SSGLIRRHTP
101: ESLPTVTKPL LEEQADEQAL PKHRLSSQGL LSPIPSRRGS MRKDEKSSMV SHEIPMSRNS SYGQAVLNGL NVLCGVGILS TPYAAKEGGW LGLMILFVYG
201: LLSFYTGILL RYCLDSESDL ETYPDIGQAA FGTTGRIFVS IVLYLELYAC CVEYIILESD NLSSLYPNAA LSIGGFQLDA RHLFALLTTL AVLPTVWLRD
301: LSVLSYISAG GVIASVLVVL CLFWIGLVDE VGIHSKGTTL NLSTLPVAIG LYGYCYSGHA VFPNIYTSMA KPSQYPAVLL TCFGICTLMY AGVAVMGYTM
401: FGESTQSQFT LNLPQDLIAT KIAVWTTVVN PFTKYALTIS PVAMSLEELI PSRHIRSHWY AIGIRTLLVF STLLVGLAIP FFGLVMSLIG SLLTMLVTLI
501: LPPACFLSIV RRKVTPTQMM LCVLIIIVGA ISSVIGSYSA LSKIVEKLTN
101: ESLPTVTKPL LEEQADEQAL PKHRLSSQGL LSPIPSRRGS MRKDEKSSMV SHEIPMSRNS SYGQAVLNGL NVLCGVGILS TPYAAKEGGW LGLMILFVYG
201: LLSFYTGILL RYCLDSESDL ETYPDIGQAA FGTTGRIFVS IVLYLELYAC CVEYIILESD NLSSLYPNAA LSIGGFQLDA RHLFALLTTL AVLPTVWLRD
301: LSVLSYISAG GVIASVLVVL CLFWIGLVDE VGIHSKGTTL NLSTLPVAIG LYGYCYSGHA VFPNIYTSMA KPSQYPAVLL TCFGICTLMY AGVAVMGYTM
401: FGESTQSQFT LNLPQDLIAT KIAVWTTVVN PFTKYALTIS PVAMSLEELI PSRHIRSHWY AIGIRTLLVF STLLVGLAIP FFGLVMSLIG SLLTMLVTLI
501: LPPACFLSIV RRKVTPTQMM LCVLIIIVGA ISSVIGSYSA LSKIVEKLTN
Arabidopsis Description
AVT1CAmino acid transporter AVT1C [Source:UniProtKB/Swiss-Prot;Acc:F4IUW3]
SUBAcon: [cytosol,nucleus,plasma membrane]
SUBAcon: [cytosol,nucleus,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.