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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • plastid 1
  • plasma membrane 5
  • extracellular 1
  • golgi 1
  • endoplasmic reticulum 1
  • vacuole 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:plastid, secretory
BaCelLo:plastid
MultiLoc:plasma membrane
Plant-mPloc:plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400036273 Potato cytosol, nucleus, plasma membrane 97.02 51.35
Solyc05g050440.2.1 Tomato extracellular, plasma membrane, vacuole 34.04 46.78
Bra007103.1-P Field mustard plasma membrane 69.79 41.62
KRH38592 Soybean endoplasmic reticulum 39.57 38.91
Bra005061.1-P Field mustard cytosol, nucleus, plasma membrane 70.64 36.01
Os04t0201800-00 Rice plasma membrane, plastid 60.85 35.57
Zm00001d043640_P001 Maize plasma membrane 25.53 35.5
Solyc05g053970.2.1 Tomato plasma membrane 50.64 33.81
Solyc11g008440.1.1 Tomato cytosol, nucleus, plasma membrane 79.15 33.51
CDY18351 Canola plastid 72.34 33.4
Solyc06g061270.1.1 Tomato cytosol, plasma membrane 29.36 32.86
AT2G39130.2 Thale cress cytosol, nucleus, plasma membrane 75.32 32.18
CDX73443 Canola cytosol, nucleus, plasma membrane 71.91 31.47
KRG91942 Soybean plasma membrane 72.77 31.43
VIT_13s0019g04660.t01 Wine grape cytosol, nucleus, plasma membrane 74.89 31.26
AT3G54830.1 Thale cress nucleus 72.34 31.14
CDX78269 Canola plasma membrane 69.79 30.94
CDX74865 Canola plasma membrane 72.34 30.8
CDY44630 Canola plasma membrane 71.91 30.78
CDX93284 Canola cytosol, nucleus, plasma membrane 68.94 29.67
Bra017088.1-P Field mustard cytosol, nucleus, plasma membrane 68.94 29.67
KRH34828 Soybean plasma membrane 69.79 29.23
Zm00001d037057_P001 Maize cytosol, nucleus, plasma membrane 64.26 28.71
GSMUA_Achr5P10650_001 Banana cytosol, nucleus, plasma membrane 67.66 28.7
TraesCSU01G023100.1 Wheat cytosol, peroxisome, plasma membrane 67.66 28.55
TraesCS2B01G065200.1 Wheat cytosol, peroxisome, plasma membrane 67.66 28.55
TraesCS2A01G052500.1 Wheat plasma membrane 67.23 28.52
HORVU2Hr1G008090.4 Barley cytosol, peroxisome, plasma membrane 67.66 28.29
GSMUA_Achr1P03170_001 Banana cytosol, nucleus, plasma membrane 67.23 28.06
Os02t0101000-01 Rice cytosol, nucleus, plasma membrane 67.66 27.85
TraesCS6A01G002400.1 Wheat cytosol, nucleus, plasma membrane 65.96 27.39
TraesCS6B01G007400.1 Wheat cytosol, peroxisome, plasma membrane 65.53 27.35
TraesCS6D01G003200.1 Wheat cytosol, nucleus, plasma membrane 65.96 27.19
Zm00001d004340_P002 Maize plasma membrane 65.96 27.19
Zm00001d048577_P001 Maize cytosol, nucleus, plasma membrane 65.53 27.16
EES06091 Sorghum plasma membrane 66.38 27.08
EER89806 Sorghum cytosol, nucleus, plasma membrane 65.53 26.97
HORVU6Hr1G001480.1 Barley plasma membrane 65.53 25.93
Solyc03g013440.2.1 Tomato plasma membrane 37.87 25.72
Solyc03g078150.2.1 Tomato peroxisome 57.45 25.71
Solyc10g084830.1.1 Tomato cytosol, peroxisome, plasma membrane 57.45 25.52
KXG25873 Sorghum plasma membrane 65.96 23.56
Solyc03g013160.2.1 Tomato plasma membrane 39.57 21.83
Solyc09g098380.1.1 Tomato plasma membrane 39.15 20.81
Solyc03g063050.1.1 Tomato extracellular, plasma membrane 22.55 19.92
Solyc06g061260.1.1 Tomato plasma membrane 15.74 19.17
Zm00001d044994_P001 Maize cytosol, plasma membrane, vacuole 11.91 18.3
Solyc03g032090.1.1 Tomato plasma membrane 22.55 12.41
Solyc02g082510.1.1 Tomato plasma membrane 21.28 11.76
Solyc10g048180.1.1 Tomato plasma membrane 20.85 11.48
Solyc02g082520.1.1 Tomato cytosol, peroxisome, plasma membrane 20.0 11.22
Solyc03g063040.2.1 Tomato endoplasmic reticulum, plasma membrane, vacuole 2.13 4.07
KRG99573 Soybean cytosol, nucleus, plasma membrane 1.28 2.8
Protein Annotations
EnsemblPlants:Solyc03g063030.2.1EnsemblPlantsGene:Solyc03g063030.2GO:GO:0003333GO:GO:0003674GO:GO:0005215GO:GO:0005575
GO:GO:0006810GO:GO:0008150GO:GO:0015171GO:GO:0016020GO:GO:0016021InterPro:AA_transpt_TM
PANTHER:PTHR22950PANTHER:PTHR22950:SF240PFAM:PF01490TMHMM:TMhelixUniParc:UPI00027692B5UniProt:K4BH51
MapMan:24.2.3.4.7:::::
Description
No Description!
Coordinates
chr3:+:33033162..33036328
Molecular Weight (calculated)
25700.7 Da
IEP (calculated)
4.442
GRAVY (calculated)
0.729
Length
235 amino acids
Sequence
(BLAST)
001: MLLRYCLDSQ PGLETYPDIG QAAFGTMGRI VISIILYVEL YASCVEYMIL EGDNLSAIFP NAHLSLGGFE LDARHLFVLI ATLAILPTVW LRDLSVLSYI
101: SVGGVIASIL VVLCLYWAGL VDHVGFESKE TILNLPTLPV AIGLYGFCYS GHAVFPNIYT SLADRSQFPA VLLTSFGLVT LLYGGTAVLG YLMFGDSAES
201: QFTLNLPKEL MVSKVAVWTT VVNPFTKYPF PESMM
Best Arabidopsis Sequence Match ( AT2G39130.1 )
(BLAST)
001: MNHVPSDQSF YIESEDEDDR KDYVEEDGGS HSDSSDDVYD ENQAHIKPSS YTTAWPQSYR QSIDLYSSVP SPGIGFLGNN SMTRFGSSFL SSGLIRRHTP
101: ESLPTVTKPL LEEQADEQAL PKHRLSSQGL LSPIPSRRGS MRKDEKSSMV SHEIPMSRNS SYGQAVLNGL NVLCGVGILS TPYAAKEGGW LGLMILFVYG
201: LLSFYTGILL RYCLDSESDL ETYPDIGQAA FGTTGRIFVS IVLYLELYAC CVEYIILESD NLSSLYPNAA LSIGGFQLDA RHLFALLTTL AVLPTVWLRD
301: LSVLSYISAG GVIASVLVVL CLFWIGLVDE VGIHSKGTTL NLSTLPVAIG LYGYCYSGHA VFPNIYTSMA KPSQYPAVLL TCFGICTLMY AGVAVMGYTM
401: FGESTQSQFT LNLPQDLIAT KIAVWTTVVN PFTKYALTIS PVAMSLEELI PSRHIRSHWY AIGIRTLLVF STLLVGLAIP FFGLVMSLIG SLLTMLVTLI
501: LPPACFLSIV RRKVTPTQMM LCVLIIIVGA ISSVIGSYSA LSKIVEKLTN
Arabidopsis Description
AVT1CAmino acid transporter AVT1C [Source:UniProtKB/Swiss-Prot;Acc:F4IUW3]
SUBAcon: [cytosol,nucleus,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.