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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • extracellular 2
  • endoplasmic reticulum 2
  • vacuole 2
  • plasma membrane 4
  • golgi 2
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:secretory
iPSORT:secretory
MultiLoc:plasma membrane
TargetP:secretory
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6A01G002400.1 Wheat cytosol, nucleus, plasma membrane 92.09 96.64
TraesCS6D01G003200.1 Wheat cytosol, nucleus, plasma membrane 92.26 96.14
TraesCS6B01G007400.1 Wheat cytosol, peroxisome, plasma membrane 90.4 95.38
Zm00001d044994_P001 Maize cytosol, plasma membrane, vacuole 20.88 81.05
Os02t0101000-01 Rice cytosol, nucleus, plasma membrane 77.1 80.21
EER89806 Sorghum cytosol, nucleus, plasma membrane 74.58 77.58
Zm00001d043640_P001 Maize plasma membrane 20.88 73.37
HORVU2Hr1G008090.4 Barley cytosol, peroxisome, plasma membrane 66.5 70.28
Zm00001d037057_P001 Maize cytosol, nucleus, plasma membrane 60.27 68.06
Solyc03g063030.2.1 Tomato plasma membrane 25.93 65.53
Bra007103.1-P Field mustard plasma membrane 40.57 61.17
GSMUA_Achr1P03170_001 Banana cytosol, nucleus, plasma membrane 56.73 59.86
GSMUA_Achr5P10650_001 Banana cytosol, nucleus, plasma membrane 55.05 59.03
VIT_13s0019g04660.t01 Wine grape cytosol, nucleus, plasma membrane 55.72 58.79
Solyc11g008440.1.1 Tomato cytosol, nucleus, plasma membrane 53.87 57.66
CDY18351 Canola plastid 48.82 56.97
HORVU2Hr1G075350.2 Barley endoplasmic reticulum, plasma membrane, vacuole 16.33 56.4
AT2G39130.2 Thale cress cytosol, nucleus, plasma membrane 51.35 55.45
PGSC0003DMT400036273 Potato cytosol, nucleus, plasma membrane 41.41 55.41
CDX78269 Canola plasma membrane 49.16 55.09
CDY44630 Canola plasma membrane 50.84 55.01
Bra005061.1-P Field mustard cytosol, nucleus, plasma membrane 42.42 54.66
Bra017088.1-P Field mustard cytosol, nucleus, plasma membrane 50.17 54.58
CDX93284 Canola cytosol, nucleus, plasma membrane 50.0 54.4
CDX74865 Canola plasma membrane 50.51 54.35
HORVU4Hr1G022660.1 Barley extracellular 20.03 53.85
CDX73443 Canola cytosol, nucleus, plasma membrane 48.48 53.63
Solyc03g063040.2.1 Tomato endoplasmic reticulum, plasma membrane, vacuole 10.94 52.85
PGSC0003DMT400019190 Potato cytosol, nucleus, plasma membrane 52.69 51.99
AT3G54830.1 Thale cress nucleus 45.12 49.08
HORVU7Hr1G038300.27 Barley plasma membrane 29.63 44.0
HORVU5Hr1G020560.3 Barley plasma membrane 42.42 42.57
Solyc03g063050.1.1 Tomato extracellular, plasma membrane 18.86 42.11
HORVU6Hr1G083720.2 Barley plastid 40.4 41.24
HORVU2Hr1G080420.1 Barley plasma membrane 29.12 40.71
HORVU2Hr1G080390.1 Barley plasma membrane 29.12 40.71
HORVU2Hr1G069080.4 Barley cytosol, peroxisome, plasma membrane 27.78 40.54
HORVU2Hr1G080430.3 Barley cytosol 29.12 39.32
HORVU2Hr1G080350.5 Barley mitochondrion, plasma membrane, vacuole 28.79 38.78
HORVU4Hr1G012350.1 Barley endoplasmic reticulum, plasma membrane 23.74 35.25
KRG99991 Soybean cytosol, nucleus, peroxisome 16.67 34.74
HORVU6Hr1G064740.1 Barley plasma membrane 17.0 23.99
HORVU5Hr1G112210.1 Barley plasma membrane 16.5 23.06
HORVU2Hr1G068460.1 Barley endoplasmic reticulum, plasma membrane, vacuole 6.06 22.93
HORVU5Hr1G053550.1 Barley plasma membrane 15.49 21.85
HORVU2Hr1G068450.4 Barley mitochondrion 13.13 18.44
HORVU5Hr1G112960.2 Barley cytosol 10.61 18.0
Protein Annotations
EnsemblPlants:HORVU6Hr1G001480.1EnsemblPlantsGene:HORVU6Hr1G001480GO:GO:0005575GO:GO:0016020GO:GO:0016021InterPro:AA_transpt_TM
PANTHER:PTHR22950PANTHER:PTHR22950:SF240PFAM:PF01490SEG:segSignalP:SignalP-noTMTMHMM:TMhelix
UniParc:UPI000B46BC61UniProt:A0A287T4U8MapMan:24.2.3.4.7:::
Description
No Description!
Coordinates
chrchr6H:-:4781177..4786496
Molecular Weight (calculated)
64394.0 Da
IEP (calculated)
6.563
GRAVY (calculated)
0.325
Length
594 amino acids
Sequence
(BLAST)
001: SNHSSHPIPS LSCLLSIFSA LLLVREAMKS LLGEERSFII ESDDDDDEED PIHKDGAGGS SSDSSSCASP RGGSGGGGGD SQPNSYTNQW PQSYRQSIDI
101: LSSVQSPSLG FLGTPTLSRL SNSFLNSSFL NNSFRGKTPE VISNLVKPLI RPTTSDEQQQ QQQHHEDIRK SSQYLLPSRK PSLQQIPEDQ KPLVVGHEVS
201: PYQQCSYTQG AMNGINVLCG VGILSTPYAI KQGGWIGLVI LIVFALLAWY TGVLLRRCLD SKEGLQTYPD IGHAAFGTTG RIAISIILYV ELYACCIEYL
301: ILESDNLSKL FPNVHLNIWG LAINSHVFFA ILTTLVVMPT TWLRDLTCLS YISAGGVVAS ILVVICLCWI GVVDHVGFEN KGTALNLPGI PIAIGLYGYC
401: YSGHGVFPNI YSSLKNRNQF PSILFTCIGF STILFTAAAV MGYKMFGEST ESQFTLNLPE NLVVSKIAVW ATVANPITKY ALTITPLAMS LEELLPRSQQ
501: KYSNIIILRS ALVVSTLIIA LSVPFFALVM ALIGSLFAML VTYILPCACF LAILKAKATW YQTATCSFII AVGVTCACVG TYSSLSGIVQ NYST
Best Arabidopsis Sequence Match ( AT2G39130.1 )
(BLAST)
001: MNHVPSDQSF YIESEDEDDR KDYVEEDGGS HSDSSDDVYD ENQAHIKPSS YTTAWPQSYR QSIDLYSSVP SPGIGFLGNN SMTRFGSSFL SSGLIRRHTP
101: ESLPTVTKPL LEEQADEQAL PKHRLSSQGL LSPIPSRRGS MRKDEKSSMV SHEIPMSRNS SYGQAVLNGL NVLCGVGILS TPYAAKEGGW LGLMILFVYG
201: LLSFYTGILL RYCLDSESDL ETYPDIGQAA FGTTGRIFVS IVLYLELYAC CVEYIILESD NLSSLYPNAA LSIGGFQLDA RHLFALLTTL AVLPTVWLRD
301: LSVLSYISAG GVIASVLVVL CLFWIGLVDE VGIHSKGTTL NLSTLPVAIG LYGYCYSGHA VFPNIYTSMA KPSQYPAVLL TCFGICTLMY AGVAVMGYTM
401: FGESTQSQFT LNLPQDLIAT KIAVWTTVVN PFTKYALTIS PVAMSLEELI PSRHIRSHWY AIGIRTLLVF STLLVGLAIP FFGLVMSLIG SLLTMLVTLI
501: LPPACFLSIV RRKVTPTQMM LCVLIIIVGA ISSVIGSYSA LSKIVEKLTN
Arabidopsis Description
AVT1CAmino acid transporter AVT1C [Source:UniProtKB/Swiss-Prot;Acc:F4IUW3]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.