Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plasma membrane, vacuole
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- vacuole 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G324000.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 92.29 | 95.76 |
| TraesCS2B01G342900.1 | Wheat | plasma membrane | 92.06 | 95.53 |
| TraesCS2A01G339100.1 | Wheat | plasma membrane | 91.61 | 95.06 |
| HORVU2Hr1G080390.1 | Barley | plasma membrane | 76.42 | 79.29 |
| HORVU2Hr1G080420.1 | Barley | plasma membrane | 76.42 | 79.29 |
| Os04t0460200-01 | Rice | endoplasmic reticulum | 43.76 | 78.46 |
| VIT_01s0026g02500.t01 | Wine grape | plasma membrane | 53.97 | 57.91 |
| Solyc05g050440.2.1 | Tomato | extracellular, plasma membrane, vacuole | 22.22 | 57.31 |
| HORVU2Hr1G080430.3 | Barley | cytosol | 56.46 | 56.59 |
| Solyc05g053970.2.1 | Tomato | plasma membrane | 44.44 | 55.68 |
| Solyc06g061270.1.1 | Tomato | cytosol, plasma membrane | 25.17 | 52.86 |
| HORVU7Hr1G038300.27 | Barley | plasma membrane | 47.62 | 52.5 |
| PGSC0003DMT400019843 | Potato | peroxisome, plasma membrane, plastid, vacuole | 17.46 | 51.33 |
| HORVU2Hr1G069080.4 | Barley | cytosol, peroxisome, plasma membrane | 46.94 | 50.86 |
| Solyc06g061260.1.1 | Tomato | plasma membrane | 20.86 | 47.67 |
| KRG89633 | Soybean | plasma membrane | 43.99 | 47.67 |
| HORVU2Hr1G075350.2 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 17.23 | 44.19 |
| HORVU4Hr1G022660.1 | Barley | extracellular | 21.32 | 42.53 |
| PGSC0003DMT400082135 | Potato | plasma membrane | 9.52 | 41.18 |
| HORVU4Hr1G012350.1 | Barley | endoplasmic reticulum, plasma membrane | 30.84 | 34.0 |
| HORVU2Hr1G008090.4 | Barley | cytosol, peroxisome, plasma membrane | 41.95 | 32.92 |
| HORVU6Hr1G083720.2 | Barley | plastid | 41.27 | 31.27 |
| HORVU5Hr1G020560.3 | Barley | plasma membrane | 39.91 | 29.73 |
| HORVU6Hr1G001480.1 | Barley | plasma membrane | 38.78 | 28.79 |
| HORVU5Hr1G112210.1 | Barley | plasma membrane | 25.17 | 26.12 |
| HORVU6Hr1G064740.1 | Barley | plasma membrane | 23.81 | 24.94 |
| HORVU5Hr1G053550.1 | Barley | plasma membrane | 23.36 | 24.47 |
| HORVU2Hr1G068460.1 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 7.71 | 21.66 |
| HORVU5Hr1G112960.2 | Barley | cytosol | 15.65 | 19.71 |
| HORVU2Hr1G068450.4 | Barley | mitochondrion | 18.14 | 18.91 |
| Os04t0460300-01 | Rice | plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:HORVU2Hr1G080350.5 | EnsemblPlantsGene:HORVU2Hr1G080350 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:AA_transpt_TM |
| PANTHER:PTHR22950 | PANTHER:PTHR22950:SF465 | PFAM:PF01490 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000B46D94E |
| UniProt:A0A287ILI2 | MapMan:24.2.3.4.7 | : | : | : | : |
Description
No Description!
Coordinates
chrchr2H:+:582407609..582409623
Molecular Weight (calculated)
46110.3 Da
IEP (calculated)
8.672
GRAVY (calculated)
0.807
Length
441 amino acids
Sequence
(BLAST)
(BLAST)
001: HKCEAASTRS GRPVAMSHAV PLLGKKEAAR PEQAAQNGAR NDGTASFVRT CLNGVNALSG GVGVLSVPYA LSEGGWLSLL LLAAVAAACW YTGLLVGRCM
101: DADPAIRTYP DIGQRAFGPP GRLLVSSFLY AEVYLVAVGF LILDGDNLDK LFPDSGVALG PVSLAGKQLF VVLVALIVAP TTWLRSLGVL AYVSAAGVFA
201: SVVVVLSVLW VAAVDGIGFS GRGTTTPLRL AGLPTALGLY TFCYCGHAVF PTLYTCMKQK SQFPKMLAIC FVLCTLNYGS MAVLGYLMYG DGVQSQVTLN
301: LPAARLSSKI AIYTTLVNPL AKYALMVTPI ATVVEERIYV AVGQGSAVPV AVRTLLVLST VVVAVALPFF GYLMALVGSF LSVGVSMLLP CVCYLRIFGA
401: PSMNCCRTAM EAGAIFGILA LGALVAVTGT YSSVMQIIHH L
101: DADPAIRTYP DIGQRAFGPP GRLLVSSFLY AEVYLVAVGF LILDGDNLDK LFPDSGVALG PVSLAGKQLF VVLVALIVAP TTWLRSLGVL AYVSAAGVFA
201: SVVVVLSVLW VAAVDGIGFS GRGTTTPLRL AGLPTALGLY TFCYCGHAVF PTLYTCMKQK SQFPKMLAIC FVLCTLNYGS MAVLGYLMYG DGVQSQVTLN
301: LPAARLSSKI AIYTTLVNPL AKYALMVTPI ATVVEERIYV AVGQGSAVPV AVRTLLVLST VVVAVALPFF GYLMALVGSF LSVGVSMLLP CVCYLRIFGA
401: PSMNCCRTAM EAGAIFGILA LGALVAVTGT YSSVMQIIHH L
001: MEEDNQEIQR DNVGSSSFFK TCFNALNALS GIGILSVPYS LARGGWLSLS LLLLLAVTAF YTSLLITKCM NADRNIKTYP DIGERAFGRP GRIIVSVFMH
101: LELYLVTTGF LILEGDNLHN LFPGFTIEMI GLRLNGKQAF MATVAFVIMP TLWWDNLSVL SYVSMSGVLA TTVTLGSISW IGAFDGIGFH QKGKLINWSG
201: IPTALSLYAF CYGAHPVLPT LYSSMKSKHQ FNNVLLICFI LCTIGYTSMA VLGYLMYGSQ TLSQITLNLP IHKTSSKVAI YTTLVNPVAK YALMITPTVN
301: TIKDWFPSRY SKKAYLHLLI STFFIISSVV IAETLPFFGY MMSLVGALLS VTVSILLPCL CYLKIFGNYK KIGCETIMLF GMVVMSVFVG VIGTYIALRD
401: IIGSV
101: LELYLVTTGF LILEGDNLHN LFPGFTIEMI GLRLNGKQAF MATVAFVIMP TLWWDNLSVL SYVSMSGVLA TTVTLGSISW IGAFDGIGFH QKGKLINWSG
201: IPTALSLYAF CYGAHPVLPT LYSSMKSKHQ FNNVLLICFI LCTIGYTSMA VLGYLMYGSQ TLSQITLNLP IHKTSSKVAI YTTLVNPVAK YALMITPTVN
301: TIKDWFPSRY SKKAYLHLLI STFFIISSVV IAETLPFFGY MMSLVGALLS VTVSILLPCL CYLKIFGNYK KIGCETIMLF GMVVMSVFVG VIGTYIALRD
401: IIGSV
Arabidopsis Description
AVT1IAmino acid transporter AVT1I [Source:UniProtKB/Swiss-Prot;Acc:F4J1Q9]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.