Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 3
- vacuole 2
- plasma membrane 3
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G240700.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 94.75 | 83.85 |
| TraesCS4D01G072600.1 | Wheat | mitochondrion, plasma membrane | 94.25 | 80.73 |
| TraesCS4B01G074300.1 | Wheat | plasma membrane | 93.5 | 79.07 |
| Zm00001d004633_P001 | Maize | plasma membrane | 78.5 | 67.67 |
| Os11t0298000-00 | Rice | mitochondrion, plastid | 80.5 | 66.67 |
| VIT_05s0062g01150.t01 | Wine grape | plasma membrane | 67.0 | 61.75 |
| PGSC0003DMT400055694 | Potato | extracellular, plasma membrane | 56.75 | 61.52 |
| GSMUA_Achr6P06880_001 | Banana | mitochondrion, plasma membrane, plastid | 72.5 | 61.31 |
| Solyc09g098380.1.1 | Tomato | plasma membrane | 63.25 | 57.24 |
| AT5G16740.1 | Thale cress | plasma membrane | 60.0 | 56.34 |
| CDY38090 | Canola | plasma membrane | 60.25 | 55.66 |
| KRG97383 | Soybean | mitochondrion | 62.0 | 52.54 |
| KRH58803 | Soybean | mitochondrion | 60.0 | 52.17 |
| Bra023581.1-P | Field mustard | plasma membrane | 40.75 | 51.75 |
| KRH31531 | Soybean | mitochondrion | 56.5 | 50.0 |
| CDX85489 | Canola | vacuole | 45.5 | 42.13 |
| HORVU2Hr1G075350.2 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 16.0 | 37.21 |
| HORVU4Hr1G022660.1 | Barley | extracellular | 18.75 | 33.94 |
| HORVU7Hr1G038300.27 | Barley | plasma membrane | 33.25 | 33.25 |
| HORVU2Hr1G080430.3 | Barley | cytosol | 34.5 | 31.36 |
| HORVU2Hr1G080350.5 | Barley | mitochondrion, plasma membrane, vacuole | 34.0 | 30.84 |
| HORVU2Hr1G080420.1 | Barley | plasma membrane | 32.75 | 30.82 |
| HORVU2Hr1G080390.1 | Barley | plasma membrane | 32.75 | 30.82 |
| HORVU2Hr1G069080.4 | Barley | cytosol, peroxisome, plasma membrane | 31.25 | 30.71 |
| HORVU2Hr1G008090.4 | Barley | cytosol, peroxisome, plasma membrane | 37.5 | 26.69 |
| HORVU6Hr1G001480.1 | Barley | plasma membrane | 35.25 | 23.74 |
| HORVU5Hr1G020560.3 | Barley | plasma membrane | 34.5 | 23.31 |
| HORVU6Hr1G083720.2 | Barley | plastid | 33.5 | 23.02 |
| HORVU5Hr1G112210.1 | Barley | plasma membrane | 21.0 | 19.76 |
| HORVU5Hr1G053550.1 | Barley | plasma membrane | 20.5 | 19.48 |
| HORVU6Hr1G064740.1 | Barley | plasma membrane | 19.0 | 18.05 |
| HORVU2Hr1G068460.1 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 6.25 | 15.92 |
| HORVU5Hr1G112960.2 | Barley | cytosol | 13.25 | 15.14 |
| HORVU2Hr1G068450.4 | Barley | mitochondrion | 15.5 | 14.66 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G012350.1 | EnsemblPlantsGene:HORVU4Hr1G012350 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:AA_transpt_TM |
| PANTHER:PTHR22950 | PANTHER:PTHR22950:SF219 | PFAM:PF01490 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000B46E0EA |
| UniProt:A0A287N8N3 | MapMan:24.2.3.4.7 | : | : | : | : |
Description
No Description!
Coordinates
chrchr4H:+:40291087..40292533
Molecular Weight (calculated)
42745.6 Da
IEP (calculated)
10.268
GRAVY (calculated)
0.917
Length
400 amino acids
Sequence
(BLAST)
(BLAST)
001: RPTSTFAQSV INMVGMLIGL GQLSTPYALA NGGWASIFLL VGLGIMCAYT AHIIGRCLDE QPGSKTYQDI GQQAFGSKGR LIASAFIYLE IFFALVSYTI
101: SLSDNIPLVF AGARLHLPWL RLSTTQLLTV IAVLVALPSL WLRNLSSISF LSLVGILMSM VIFVTIVCTA AFTHVGLGRH IPVLRLDKIP AVSGLYMFSY
201: AGHIVFPNIY TAMKDPSSFT KVSVTSFSMV VVLYTALAFV GASLFGPGVS SQVTLSMPPG LVVTKVALWA TVLTPVTKYA LEFAPFAIQL EHHLPATMGP
301: RARIIIRGSI GSAGLLIILA LALSVPYFQY VLSLTGSLIS VAISVIFPCA FYLKIRWGRL SRQVVVLNAA MIAVGFVLAV VGTASSAKLL VKSIQNGHVA
101: SLSDNIPLVF AGARLHLPWL RLSTTQLLTV IAVLVALPSL WLRNLSSISF LSLVGILMSM VIFVTIVCTA AFTHVGLGRH IPVLRLDKIP AVSGLYMFSY
201: AGHIVFPNIY TAMKDPSSFT KVSVTSFSMV VVLYTALAFV GASLFGPGVS SQVTLSMPPG LVVTKVALWA TVLTPVTKYA LEFAPFAIQL EHHLPATMGP
301: RARIIIRGSI GSAGLLIILA LALSVPYFQY VLSLTGSLIS VAISVIFPCA FYLKIRWGRL SRQVVVLNAA MIAVGFVLAV VGTASSAKLL VKSIQNGHVA
001: MVCVACVEEN KGCECEHEKP VRELVLEAAS ENSSFLHSVI NMVGMLIGLG QLSMPYAVES GGWMSIFLLI SFGILTTYTS HILGKCIRRN PKSKSYSDIG
101: YSAFGRHGRL IVCLFIYLEI FMALVSYTIS LHDNISAAFP ATFSNHGHFP AAKLTAVAVA IALPSLWIRD LSSISFLSSG GILMSAIIFG SVVYTAIFGG
201: VIDDGKIPVL RLENIPTVSG IYLFSFGGHI VFPNLYTSMK DPSKFTKVSI VSFATVTALY GALAITGAKM FGPSVNSQIT LSLPKHLVVT KIALWATVLT
301: PMTKYALEFA PLAIQLERSL PSTMTDRTKL VARGLMGSAL LLVILALALT VPYFGYVLSL TGSLVSVTIA VTLPSAFYLK ICWDGMTKFT RAANLGFVVL
401: GCVLGVLGSF ESSKLLVKEL VRVHGG
101: YSAFGRHGRL IVCLFIYLEI FMALVSYTIS LHDNISAAFP ATFSNHGHFP AAKLTAVAVA IALPSLWIRD LSSISFLSSG GILMSAIIFG SVVYTAIFGG
201: VIDDGKIPVL RLENIPTVSG IYLFSFGGHI VFPNLYTSMK DPSKFTKVSI VSFATVTALY GALAITGAKM FGPSVNSQIT LSLPKHLVVT KIALWATVLT
301: PMTKYALEFA PLAIQLERSL PSTMTDRTKL VARGLMGSAL LLVILALALT VPYFGYVLSL TGSLVSVTIA VTLPSAFYLK ICWDGMTKFT RAANLGFVVL
401: GCVLGVLGSF ESSKLLVKEL VRVHGG
Arabidopsis Description
AVT1HAmino acid transporter AVT1H [Source:UniProtKB/Swiss-Prot;Acc:Q9LFE3]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.