Factsheet for TraesCS4D01G072600.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, mitochondrion

Predictor Summary:

mitochondrion 4
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plasma membrane
Any Predictor:	mitochondrion, plasma membrane
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G012350.1	Barley	endoplasmic reticulum, plasma membrane	80.73	94.25
TraesCS4A01G240700.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	91.22	94.25
TraesCS4B01G074300.1	Wheat	plasma membrane	91.22	90.06
Os11t0298000-00	Rice	mitochondrion, plastid	77.3	74.74
Zm00001d004633_P001	Maize	plasma membrane	73.66	74.14
GSMUA_Achr6P06880_001	Banana	mitochondrion, plasma membrane, plastid	67.45	66.6
VIT_05s0062g01150.t01	Wine grape	plasma membrane	58.89	63.36
PGSC0003DMT400055694	Potato	extracellular, plasma membrane	47.97	60.7
CDY38090	Canola	plasma membrane	54.18	58.43
AT5G16740.1	Thale cress	plasma membrane	52.89	57.98
Solyc09g098380.1.1	Tomato	plasma membrane	54.82	57.92
KRH58803	Soybean	mitochondrion	55.25	56.09
Bra023581.1-P	Field mustard	plasma membrane	37.05	54.92
KRG97383	Soybean	mitochondrion	55.25	54.66
KRH31531	Soybean	mitochondrion	50.54	52.21
CDX85489	Canola	vacuole	41.11	44.44
TraesCS7D01G189100.1	Wheat	plasma membrane	29.76	34.84
TraesCS2D01G324400.2	Wheat	plasma membrane	31.91	33.86
TraesCS2D01G324000.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	30.62	33.65
TraesCS2D01G280800.1	Wheat	endoplasmic reticulum, plasma membrane, plastid, vacuole	27.19	31.2
TraesCS2D01G324300.1	Wheat	plasma membrane	29.76	31.1
TraesCS4D01G284600.1	Wheat	peroxisome, plasma membrane, vacuole	28.69	31.02
TraesCS6D01G331300.1	Wheat	plasma membrane	31.05	28.16
TraesCS4D01G284500.1	Wheat	plasma membrane	21.84	27.72
TraesCS6D01G003200.1	Wheat	cytosol, nucleus, plasma membrane	31.69	25.96
TraesCS6D01G331400.2	Wheat	cytosol, peroxisome, plasma membrane	29.76	25.88
TraesCS5D01G091100.1	Wheat	plasma membrane	31.05	24.33
TraesCS5D01G485100.1	Wheat	plasma membrane	19.7	21.85
TraesCS5D01G485300.1	Wheat	plasma membrane	18.84	20.85
TraesCS6D01G235500.1	Wheat	plasma membrane	18.42	20.43
TraesCS2D01G278600.1	Wheat	plasma membrane	18.2	20.24
TraesCS5D01G180000.1	Wheat	plastid	16.27	19.69
TraesCS2D01G400900.1	Wheat	plasma membrane	17.56	19.39

Protein Annotations

EnsemblPlants:TraesCS4D01G072600.1	EnsemblPlantsGene:TraesCS4D01G072600	InterPro:AA_transpt_TM	PANTHER:PTHR22950	PANTHER:PTHR22950:SF219	PFAM:PF01490
SEG:seg	TMHMM:TMhelix	MapMan:24.2.3.4.7	:	:	:

Description

No Description!

Coordinates

chr4D:-:47521319..47523361

Molecular Weight (calculated)

49995.0 Da

IEP (calculated)

9.443

GRAVY (calculated)

0.669

Length

467 amino acids

Sequence
(BLAST)

001: MASRWCELVC PQPKQVASES MHGARLAAQQ LSRGRDACDV EAGKPCQEAD GGGRVEAVAV TTQQHHSKPT STFAQSVINM VGMLIGLGQL STPYALENGG
101: WASIFLLVGL GIMCAYTANI IGRCLDEEPS SKTYQDIGQQ AFGSKGRLIA SAFIYLEIFF ALVSYTISLS DNIPLVFAGV RLHLPWLRLS TTQLLTVIAV
201: LVALPSLWLR NLSSISFLSF AGILMSMVIF VTILCTAAFS NVGLGKHIPV LRLDKIPTVS GLYMFSYAGH IVFPNIYTVM KDPSSFTKVS VTSFSMVAVL
301: YTGLAFVGAS LFGPTVNSQV TLSMPPGLLV TKVALWATVL TPVTKYALEF APFAIQLEHH LPATMGPRAR IIIRGSIGSA GLLLILALAL SVPYFQYVLS
401: LTGSLVSVAI SVIFPCAFYL KIRWDRLSRP VVVLNAAMIA VGFVLAVVGT ASSAKLLVKS IQNGHVA

Best Arabidopsis Sequence Match ( AT5G16740.1 )
(BLAST)

001: MVCVACVEEN KGCECEHEKP VRELVLEAAS ENSSFLHSVI NMVGMLIGLG QLSMPYAVES GGWMSIFLLI SFGILTTYTS HILGKCIRRN PKSKSYSDIG
101: YSAFGRHGRL IVCLFIYLEI FMALVSYTIS LHDNISAAFP ATFSNHGHFP AAKLTAVAVA IALPSLWIRD LSSISFLSSG GILMSAIIFG SVVYTAIFGG
201: VIDDGKIPVL RLENIPTVSG IYLFSFGGHI VFPNLYTSMK DPSKFTKVSI VSFATVTALY GALAITGAKM FGPSVNSQIT LSLPKHLVVT KIALWATVLT
301: PMTKYALEFA PLAIQLERSL PSTMTDRTKL VARGLMGSAL LLVILALALT VPYFGYVLSL TGSLVSVTIA VTLPSAFYLK ICWDGMTKFT RAANLGFVVL
401: GCVLGVLGSF ESSKLLVKEL VRVHGG

Arabidopsis Description

AVT1HAmino acid transporter AVT1H [Source:UniProtKB/Swiss-Prot;Acc:Q9LFE3]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.