Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- golgi 1
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G472600.1 | Wheat | plasma membrane | 97.16 | 96.47 |
| TraesCS5B01G485500.1 | Wheat | plasma membrane | 95.26 | 94.59 |
| HORVU5Hr1G112210.1 | Barley | plasma membrane | 94.55 | 93.88 |
| TraesCS5D01G485100.1 | Wheat | plasma membrane | 89.57 | 89.79 |
| Os03t0817200-01 | Rice | plasma membrane | 77.49 | 78.23 |
| EER93207 | Sorghum | plasma membrane | 75.36 | 74.65 |
| TraesCS2D01G278600.1 | Wheat | plasma membrane | 59.72 | 60.0 |
| TraesCS5D01G180000.1 | Wheat | plastid | 51.42 | 56.22 |
| KRH68062 | Soybean | plasma membrane | 51.66 | 51.9 |
| KRG96325 | Soybean | plasma membrane | 50.95 | 50.95 |
| VIT_05s0062g01130.t01 | Wine grape | plasma membrane | 38.39 | 50.47 |
| CDY08487 | Canola | plasma membrane | 49.53 | 50.12 |
| Bra001425.1-P | Field mustard | plasma membrane | 50.47 | 50.0 |
| CDX73848 | Canola | plasma membrane | 50.47 | 50.0 |
| CDY01068 | Canola | plasma membrane | 49.53 | 49.88 |
| CDY53922 | Canola | plasma membrane | 50.24 | 49.77 |
| AT3G11900.2 | Thale cress | plasma membrane | 50.71 | 49.54 |
| Bra034803.1-P | Field mustard | plasma membrane | 49.53 | 48.95 |
| GSMUA_Achr1P27880_001 | Banana | nucleus, peroxisome, plasma membrane | 37.91 | 45.85 |
| TraesCS6D01G235500.1 | Wheat | plasma membrane | 34.83 | 34.92 |
| TraesCS2D01G400900.1 | Wheat | plasma membrane | 33.18 | 33.1 |
| TraesCS2D01G324000.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 26.07 | 25.88 |
| TraesCS4D01G284600.1 | Wheat | peroxisome, plasma membrane, vacuole | 24.64 | 24.07 |
| TraesCS2D01G324300.1 | Wheat | plasma membrane | 25.36 | 23.94 |
| TraesCS4D01G284500.1 | Wheat | plasma membrane | 20.38 | 23.37 |
| TraesCS2D01G280800.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid, vacuole | 22.51 | 23.34 |
| TraesCS7D01G189100.1 | Wheat | plasma membrane | 21.8 | 23.06 |
| TraesCS2D01G324400.2 | Wheat | plasma membrane | 23.93 | 22.95 |
| TraesCS6D01G331300.1 | Wheat | plasma membrane | 24.41 | 20.0 |
| TraesCS6D01G331400.2 | Wheat | cytosol, peroxisome, plasma membrane | 24.17 | 18.99 |
| TraesCS4D01G072600.1 | Wheat | mitochondrion, plasma membrane | 20.85 | 18.84 |
| TraesCS5D01G091100.1 | Wheat | plasma membrane | 25.36 | 17.95 |
| TraesCS6D01G003200.1 | Wheat | cytosol, nucleus, plasma membrane | 23.93 | 17.72 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G485300.1 | EnsemblPlantsGene:TraesCS5D01G485300 | InterPro:AA_transpt_TM | PANTHER:PTHR22950 | PANTHER:PTHR22950:SF325 | PFAM:PF01490 |
| SEG:seg | TMHMM:TMhelix | MapMan:24.2.3.4.4 | : | : | : |
Description
No Description!
Coordinates
chr5D:+:520888219..520889689
Molecular Weight (calculated)
44217.5 Da
IEP (calculated)
6.637
GRAVY (calculated)
0.805
Length
422 amino acids
Sequence
(BLAST)
(BLAST)
001: MTPEVKVPLL EGRGATPAQT LGNIVVSIVG TGVLGLPFAF RTAGWLAGAL GVAGAGAATF YCMLLLLDCR DKLREQETEE DGLGVEQRCH GGNYTYGDLG
101: ERGFGPIGRY FTEAIIIIGQ TGGSVAYLVF IGQNLSSVLP ALSPPAVVLA LLLPAEIALS FVRSLSALAP FSILADACTV LAVAAVVKED VQLLAERGRP
201: FAGRSAFAGL WGVPFACGVA VFCFEGFCLT LALEASMSNR GRFRPVLFQA IVGVTVVYVG FGVCGYLAYG DATRDIVTLN LPDNWSTAAV KVVLCVGLAL
301: TFAVMMYPIH EIVEARLLAP GGWVRRRCGG VVQRAALHLS RVAVVAALAA IACFVPAFGD FVAFVGSTVC ALLSFVLPAL FHLRFVGPTA SPWALAVDYF
401: LLLAGLVFAG HGMYTVLAPS DS
101: ERGFGPIGRY FTEAIIIIGQ TGGSVAYLVF IGQNLSSVLP ALSPPAVVLA LLLPAEIALS FVRSLSALAP FSILADACTV LAVAAVVKED VQLLAERGRP
201: FAGRSAFAGL WGVPFACGVA VFCFEGFCLT LALEASMSNR GRFRPVLFQA IVGVTVVYVG FGVCGYLAYG DATRDIVTLN LPDNWSTAAV KVVLCVGLAL
301: TFAVMMYPIH EIVEARLLAP GGWVRRRCGG VVQRAALHLS RVAVVAALAA IACFVPAFGD FVAFVGSTVC ALLSFVLPAL FHLRFVGPTA SPWALAVDYF
401: LLLAGLVFAG HGMYTVLAPS DS
001: MGLEEQGRAR EDTPLLGKGR PLSSKFKTFA NVFIAIVGAG VLGLPYAFKR TGWLMGLLTL FSVAALINHC MMLLVHIRRK LGVSNIGSFG DLGFAACGNL
101: GRFVVDILII LSQAGFCVGY LIFIGNTLAN LSKPTKSTTL MSLRHLMGVS PKSLYIWGCF PFQLGLNSIK TLTHLAPLSI FADVVDLGAM AVVIVEDIKI
201: TVVQRPQVVA FGGMSVFFYG MGVAVYAFEG VGMVLPLESE TKDKDKFGKV LALSMLFIAV MYGSFGVLGY MAFGDDTMDI ITANLGAGVV SSLVQLGLCI
301: NLFFTFPLMM NPVFEIVERR FWSGMYCVWL RWLLVLAVTL VALLVPNFAD FLSLVGSSVC CALGFVLPSL FHLMVFKDEM EWKQRALDVG ILLLGVILGV
401: SGTWSSLTEI FQE
101: GRFVVDILII LSQAGFCVGY LIFIGNTLAN LSKPTKSTTL MSLRHLMGVS PKSLYIWGCF PFQLGLNSIK TLTHLAPLSI FADVVDLGAM AVVIVEDIKI
201: TVVQRPQVVA FGGMSVFFYG MGVAVYAFEG VGMVLPLESE TKDKDKFGKV LALSMLFIAV MYGSFGVLGY MAFGDDTMDI ITANLGAGVV SSLVQLGLCI
301: NLFFTFPLMM NPVFEIVERR FWSGMYCVWL RWLLVLAVTL VALLVPNFAD FLSLVGSSVC CALGFVLPSL FHLMVFKDEM EWKQRALDVG ILLLGVILGV
401: SGTWSSLTEI FQE
Arabidopsis Description
AVT3BAmino acid transporter AVT3B [Source:UniProtKB/Swiss-Prot;Acc:F4ILY9]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.