Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, vacuole, plasma membrane
Predictor Summary:
Predictor Summary:
- peroxisome 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G285800.1 | Wheat | peroxisome, plasma membrane, vacuole | 93.52 | 93.74 |
| TraesCS4A01G018400.1 | Wheat | peroxisome, plasma membrane, vacuole | 92.36 | 92.58 |
| TraesCS4D01G284500.1 | Wheat | plasma membrane | 71.53 | 83.97 |
| Os01t0597600-01 | Rice | peroxisome, plasma membrane, vacuole | 78.7 | 80.19 |
| OQU87120 | Sorghum | peroxisome, plasma membrane, vacuole | 78.01 | 76.07 |
| TraesCS2D01G324000.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 53.24 | 54.12 |
| TraesCS2D01G324300.1 | Wheat | plasma membrane | 54.17 | 52.35 |
| TraesCS2D01G324400.2 | Wheat | plasma membrane | 53.24 | 52.27 |
| GSMUA_Achr6P35440_001 | Banana | plasma membrane | 51.39 | 51.03 |
| VIT_01s0026g02500.t01 | Wine grape | plasma membrane | 48.15 | 50.61 |
| PGSC0003DMT400019843 | Potato | peroxisome, plasma membrane, plastid, vacuole | 16.67 | 48.0 |
| TraesCS7D01G189100.1 | Wheat | plasma membrane | 43.98 | 47.62 |
| TraesCS2D01G280800.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid, vacuole | 44.21 | 46.93 |
| Solyc05g053970.2.1 | Tomato | plasma membrane | 37.96 | 46.59 |
| Solyc05g050440.2.1 | Tomato | extracellular, plasma membrane, vacuole | 18.06 | 45.61 |
| Solyc06g061270.1.1 | Tomato | cytosol, plasma membrane | 21.99 | 45.24 |
| Solyc06g061260.1.1 | Tomato | plasma membrane | 19.21 | 43.01 |
| KRG89633 | Soybean | plasma membrane | 40.51 | 43.0 |
| PGSC0003DMT400082135 | Potato | plasma membrane | 9.49 | 40.2 |
| Zm00001d044387_P001 | Maize | nucleus | 76.39 | 38.55 |
| TraesCS6D01G331300.1 | Wheat | plasma membrane | 35.88 | 30.1 |
| TraesCS6D01G331400.2 | Wheat | cytosol, peroxisome, plasma membrane | 36.81 | 29.61 |
| TraesCS4D01G072600.1 | Wheat | mitochondrion, plasma membrane | 31.02 | 28.69 |
| TraesCS6D01G003200.1 | Wheat | cytosol, nucleus, plasma membrane | 37.73 | 28.6 |
| TraesCS5D01G091100.1 | Wheat | plasma membrane | 37.73 | 27.35 |
| TraesCS5D01G485100.1 | Wheat | plasma membrane | 24.31 | 24.94 |
| TraesCS5D01G485300.1 | Wheat | plasma membrane | 24.07 | 24.64 |
| TraesCS6D01G235500.1 | Wheat | plasma membrane | 23.15 | 23.75 |
| TraesCS2D01G400900.1 | Wheat | plasma membrane | 22.22 | 22.7 |
| TraesCS2D01G278600.1 | Wheat | plasma membrane | 21.53 | 22.14 |
| TraesCS5D01G180000.1 | Wheat | plastid | 18.75 | 20.98 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G284600.1 | EnsemblPlantsGene:TraesCS4D01G284600 | InterPro:AA_transpt_TM | PANTHER:PTHR22950 | PANTHER:PTHR22950:SF297 | PFAM:PF01490 |
| SEG:seg | TMHMM:TMhelix | MapMan:24.2.3.4.7 | : | : | : |
Description
No Description!
Coordinates
chr4D:-:455701692..455702990
Molecular Weight (calculated)
45407.0 Da
IEP (calculated)
9.055
GRAVY (calculated)
0.758
Length
432 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDHKTSRLA ATASPLGEPL LTATGKRVVD GDAEAQLPPY RSAGASFSRT CLNLTNAVSG IGVLTMPYAV SRGGWLSLAL FALVGAVCYY TGTLIARCMR
101: ADGSVATYPD VGQLAFGAAG RRTVAVFMYV ELYLVAISFL VLEGDNLDKL FPGASVELPA GYQLRGKQLF IVLAGAVVLP TTWLKNLGVL AYVSALGLVA
201: SAALTASLVW AGVSESGFRG SGNVLNLAGL PTSLGLYFVC FTGHAVFPTI YSSMKNSKQF SQVLLFSSVL CSLNYGLTAV LGYLIYGDDV QSQVTLNLPS
301: GRVYTKIAIV MTLVNPLTKY ALLVAPITSA IEERFSLAGS GPARVAVSTA VLVSTVAVAS MVPFFGFLMS FIGSLLSVMA TVFFPCLCYL KIYKAKGLRR
401: VEVAAIVAIL LLGAFVAVTG TYSSLLDIIG TF
101: ADGSVATYPD VGQLAFGAAG RRTVAVFMYV ELYLVAISFL VLEGDNLDKL FPGASVELPA GYQLRGKQLF IVLAGAVVLP TTWLKNLGVL AYVSALGLVA
201: SAALTASLVW AGVSESGFRG SGNVLNLAGL PTSLGLYFVC FTGHAVFPTI YSSMKNSKQF SQVLLFSSVL CSLNYGLTAV LGYLIYGDDV QSQVTLNLPS
301: GRVYTKIAIV MTLVNPLTKY ALLVAPITSA IEERFSLAGS GPARVAVSTA VLVSTVAVAS MVPFFGFLMS FIGSLLSVMA TVFFPCLCYL KIYKAKGLRR
401: VEVAAIVAIL LLGAFVAVTG TYSSLLDIIG TF
001: MEEDNQEIQR DNVGSSSFFK TCFNALNALS GIGILSVPYS LARGGWLSLS LLLLLAVTAF YTSLLITKCM NADRNIKTYP DIGERAFGRP GRIIVSVFMH
101: LELYLVTTGF LILEGDNLHN LFPGFTIEMI GLRLNGKQAF MATVAFVIMP TLWWDNLSVL SYVSMSGVLA TTVTLGSISW IGAFDGIGFH QKGKLINWSG
201: IPTALSLYAF CYGAHPVLPT LYSSMKSKHQ FNNVLLICFI LCTIGYTSMA VLGYLMYGSQ TLSQITLNLP IHKTSSKVAI YTTLVNPVAK YALMITPTVN
301: TIKDWFPSRY SKKAYLHLLI STFFIISSVV IAETLPFFGY MMSLVGALLS VTVSILLPCL CYLKIFGNYK KIGCETIMLF GMVVMSVFVG VIGTYIALRD
401: IIGSV
101: LELYLVTTGF LILEGDNLHN LFPGFTIEMI GLRLNGKQAF MATVAFVIMP TLWWDNLSVL SYVSMSGVLA TTVTLGSISW IGAFDGIGFH QKGKLINWSG
201: IPTALSLYAF CYGAHPVLPT LYSSMKSKHQ FNNVLLICFI LCTIGYTSMA VLGYLMYGSQ TLSQITLNLP IHKTSSKVAI YTTLVNPVAK YALMITPTVN
301: TIKDWFPSRY SKKAYLHLLI STFFIISSVV IAETLPFFGY MMSLVGALLS VTVSILLPCL CYLKIFGNYK KIGCETIMLF GMVVMSVFVG VIGTYIALRD
401: IIGSV
Arabidopsis Description
AVT1IAmino acid transporter AVT1I [Source:UniProtKB/Swiss-Prot;Acc:F4J1Q9]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.