Factsheet for TraesCS2D01G324000.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, plasma membrane

Predictor Summary:

golgi 2
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, plasma membrane
Any Predictor:	endoplasmic reticulum, golgi, plasma membrane
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G342900.1	Wheat	plasma membrane	96.24	96.24
TraesCS2A01G339100.1	Wheat	plasma membrane	96.0	96.0
HORVU2Hr1G080350.5	Barley	mitochondrion, plasma membrane, vacuole	95.76	92.29
Os04t0460200-01	Rice	endoplasmic reticulum	45.41	78.46
TraesCS2D01G324300.1	Wheat	plasma membrane	80.94	76.96
TraesCS2D01G324400.2	Wheat	plasma membrane	61.18	59.09
VIT_01s0026g02500.t01	Wine grape	plasma membrane	56.0	57.91
Solyc05g050440.2.1	Tomato	extracellular, plasma membrane, vacuole	22.59	56.14
Solyc05g053970.2.1	Tomato	plasma membrane	45.65	55.11
Solyc06g061270.1.1	Tomato	cytosol, plasma membrane	26.35	53.33
TraesCS4D01G284600.1	Wheat	peroxisome, plasma membrane, vacuole	54.12	53.24
TraesCS7D01G189100.1	Wheat	plasma membrane	49.88	53.13
TraesCS2D01G280800.1	Wheat	endoplasmic reticulum, plasma membrane, plastid, vacuole	49.18	51.35
PGSC0003DMT400019843	Potato	peroxisome, plasma membrane, plastid, vacuole	18.12	51.33
TraesCS4D01G284500.1	Wheat	plasma membrane	42.35	48.91
Solyc06g061260.1.1	Tomato	plasma membrane	21.65	47.67
KRG89633	Soybean	plasma membrane	45.65	47.67
PGSC0003DMT400082135	Potato	plasma membrane	9.65	40.2
TraesCS6D01G331300.1	Wheat	plasma membrane	41.18	33.98
TraesCS6D01G331400.2	Wheat	cytosol, peroxisome, plasma membrane	42.82	33.89
TraesCS6D01G003200.1	Wheat	cytosol, nucleus, plasma membrane	41.41	30.88
TraesCS4D01G072600.1	Wheat	mitochondrion, plasma membrane	33.65	30.62
TraesCS5D01G091100.1	Wheat	plasma membrane	41.88	29.87
TraesCS5D01G485300.1	Wheat	plasma membrane	25.88	26.07
TraesCS5D01G485100.1	Wheat	plasma membrane	25.41	25.65
TraesCS6D01G235500.1	Wheat	plasma membrane	24.94	25.18
TraesCS2D01G400900.1	Wheat	plasma membrane	24.0	24.11
TraesCS5D01G180000.1	Wheat	plastid	20.71	22.8
TraesCS2D01G278600.1	Wheat	plasma membrane	22.35	22.62
Os04t0460300-01	Rice	plastid	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS2D01G324000.1	EnsemblPlantsGene:TraesCS2D01G324000	InterPro:AA_transpt_TM	PANTHER:PTHR22950	PANTHER:PTHR22950:SF465	PFAM:PF01490
SEG:seg	TMHMM:TMhelix	MapMan:24.2.3.4.7	:	:	:

Description

No Description!

Coordinates

chr2D:+:417086434..417087925

Molecular Weight (calculated)

44417.4 Da

IEP (calculated)

8.782

GRAVY (calculated)

0.879

Length

425 amino acids

Sequence
(BLAST)

001: MSHAVPLLGR KEAARPEQAA QKGARNDGSA SFVRTCLNGV NALSGVGVLS VPYALSEGGW LSLLLLAAVA AACWYTGLLV GRCMDADPAI RTYPDIGQRA
101: FGSPGRLLVS SFLYAEVYLV AVGFLILDGD NLDKLFPGSS VALGPVSLAG KQLFVVLVAL MVAPTTWLRS LGVLAYVSAA GVFASLVVVL SVLWVAAVDG
201: VGFSGRGTTT PLRLAGLPTA LGLYTFCYCG HAVFPTLYTC MKQKSQFPKM LAICFVLCTL NYGSMAVLGY LMYGDGVQSQ VTLNLPAARL SSKIAIYTTL
301: VNPLAKYALM VTPIATVVEE RICVAVGQGS AVPVAVRTLL VLSTVAVAIA VPFFGYLMAL VGSFLSVGVC MLLPCVCYLR IFGAPSVKCS RTAMEAAAIF
401: GILALGALVA VTGTYSSVMQ IIHHL

Best Arabidopsis Sequence Match ( AT3G28960.1 )
(BLAST)

001: MEEDNQEIQR DNVGSSSFFK TCFNALNALS GIGILSVPYS LARGGWLSLS LLLLLAVTAF YTSLLITKCM NADRNIKTYP DIGERAFGRP GRIIVSVFMH
101: LELYLVTTGF LILEGDNLHN LFPGFTIEMI GLRLNGKQAF MATVAFVIMP TLWWDNLSVL SYVSMSGVLA TTVTLGSISW IGAFDGIGFH QKGKLINWSG
201: IPTALSLYAF CYGAHPVLPT LYSSMKSKHQ FNNVLLICFI LCTIGYTSMA VLGYLMYGSQ TLSQITLNLP IHKTSSKVAI YTTLVNPVAK YALMITPTVN
301: TIKDWFPSRY SKKAYLHLLI STFFIISSVV IAETLPFFGY MMSLVGALLS VTVSILLPCL CYLKIFGNYK KIGCETIMLF GMVVMSVFVG VIGTYIALRD
401: IIGSV

Arabidopsis Description

AVT1IAmino acid transporter AVT1I [Source:UniProtKB/Swiss-Prot;Acc:F4J1Q9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.