Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G324000.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 96.0 | 96.0 |
| TraesCS2B01G342900.1 | Wheat | plasma membrane | 95.76 | 95.76 |
| HORVU2Hr1G080350.5 | Barley | mitochondrion, plasma membrane, vacuole | 95.06 | 91.61 |
| Os04t0460200-01 | Rice | endoplasmic reticulum | 45.18 | 78.05 |
| TraesCS2A01G338800.1 | Wheat | plasma membrane | 80.94 | 76.96 |
| TraesCS2A01G338600.1 | Wheat | plasma membrane | 61.18 | 59.09 |
| VIT_01s0026g02500.t01 | Wine grape | plasma membrane | 56.24 | 58.15 |
| Solyc05g050440.2.1 | Tomato | extracellular, plasma membrane, vacuole | 22.35 | 55.56 |
| Solyc05g053970.2.1 | Tomato | plasma membrane | 45.41 | 54.83 |
| TraesCS7A01G188100.1 | Wheat | plasma membrane | 49.65 | 52.88 |
| Solyc06g061270.1.1 | Tomato | cytosol, plasma membrane | 26.12 | 52.86 |
| TraesCS4A01G018500.1 | Wheat | peroxisome, plasma membrane, vacuole | 52.47 | 51.74 |
| TraesCS2A01G282000.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid, vacuole | 49.18 | 51.35 |
| PGSC0003DMT400019843 | Potato | peroxisome, plasma membrane, plastid, vacuole | 18.12 | 51.33 |
| TraesCS4A01G018400.1 | Wheat | peroxisome, plasma membrane, vacuole | 52.0 | 51.28 |
| TraesCS4A01G018300.1 | Wheat | peroxisome, plasma membrane, vacuole | 46.35 | 48.52 |
| KRG89633 | Soybean | plasma membrane | 45.88 | 47.91 |
| Solyc06g061260.1.1 | Tomato | plasma membrane | 21.65 | 47.67 |
| PGSC0003DMT400082135 | Potato | plasma membrane | 9.88 | 41.18 |
| TraesCS6A01G348300.2 | Wheat | cytosol, plasma membrane, vacuole | 41.41 | 36.9 |
| TraesCS6A01G348400.1 | Wheat | cytosol, peroxisome, plasma membrane | 43.06 | 34.59 |
| TraesCS2A01G052500.1 | Wheat | plasma membrane | 42.82 | 32.85 |
| TraesCS6A01G002400.1 | Wheat | cytosol, nucleus, plasma membrane | 41.18 | 30.92 |
| TraesCS4A01G240700.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 32.71 | 30.75 |
| TraesCS5A01G081500.1 | Wheat | plasma membrane | 42.35 | 30.15 |
| TraesCS6A01G254100.1 | Wheat | plasma membrane | 25.41 | 25.65 |
| TraesCS5A01G472500.1 | Wheat | plasma membrane | 25.18 | 25.42 |
| TraesCS5A01G472600.1 | Wheat | plasma membrane | 25.18 | 25.18 |
| TraesCS5A01G176900.1 | Wheat | plasma membrane | 24.47 | 24.7 |
| TraesCS2A01G403800.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid, vacuole | 24.0 | 24.11 |
| TraesCS2A01G279700.1 | Wheat | plasma membrane | 22.82 | 23.1 |
| TraesCS2A01G279600.1 | Wheat | plasma membrane | 0.24 | 0.28 |
| Os04t0460300-01 | Rice | plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G339100.1 | EnsemblPlantsGene:TraesCS2A01G339100 | InterPro:AA_transpt_TM | PANTHER:PTHR22950 | PANTHER:PTHR22950:SF465 | PFAM:PF01490 |
| SEG:seg | TMHMM:TMhelix | MapMan:24.2.3.4.7 | : | : | : |
Description
No Description!
Coordinates
chr2A:-:572840773..572842262
Molecular Weight (calculated)
44692.8 Da
IEP (calculated)
8.964
GRAVY (calculated)
0.853
Length
425 amino acids
Sequence
(BLAST)
(BLAST)
001: MSHAVPLLGK KEAARPEQAA PKGARNDGSA SFVRTCLNGV NALSGVGVLS VPYALSEGGW LSLLLLAAVA AACWYTGLLV GRCMDADPAI RTYPDIGHRA
101: FGRPGRLLVS SFLYAEVYLV AVGFLILDGD NLDKLFPDSS VALGPVSLAG KQLFVVLVAL MVAPTTWLRS LGVLAYVSAA GVFASVVVVL SVLWVAAVDG
201: VGFSGRATTM PLRLAGLPTA LGLYTFCYCG HAVFPTLYTC MKQKSQFPKM LAICFVLCTL NYGSMAVLGY LMYGDGVQSQ VTLNLPAARL SSKIAIYTTL
301: VNPLTKYALM VTPIATVIEE RIYVAAGHGS AVPVAVRTLL VLSTVVVAIA LPFFGYLMAL VGSFLSVGVC MLLPCVCYLR IFGAPSVKCR RTAMEAAAIF
401: GILALGALAA VTGTYSSVMQ IIHHL
101: FGRPGRLLVS SFLYAEVYLV AVGFLILDGD NLDKLFPDSS VALGPVSLAG KQLFVVLVAL MVAPTTWLRS LGVLAYVSAA GVFASVVVVL SVLWVAAVDG
201: VGFSGRATTM PLRLAGLPTA LGLYTFCYCG HAVFPTLYTC MKQKSQFPKM LAICFVLCTL NYGSMAVLGY LMYGDGVQSQ VTLNLPAARL SSKIAIYTTL
301: VNPLTKYALM VTPIATVIEE RIYVAAGHGS AVPVAVRTLL VLSTVVVAIA LPFFGYLMAL VGSFLSVGVC MLLPCVCYLR IFGAPSVKCR RTAMEAAAIF
401: GILALGALAA VTGTYSSVMQ IIHHL
001: MSEDKDYMSE PFIVKKIDDE ESLLDDYNPQ GNTSFSKTCF HGINALSGVG ILSVPYALAS GGWLSLIILF TVAITTFYCA ILIKRCMEMD PLLRSYPDIG
101: YKAFGNTGRV IVSIFMNLEL YLVATSFLIL EGDNLNKLFS NVGLNFMGLE FQGKQMFIIM VALIILPSVW LDNMRILSYV SASGVFASGV ILASIFSVGA
201: FEGVGFKNND SEVFRLNGVA TSVSLYAFCY CAHPVFPTLY TSMKNKRQFS NVMIICFTIC TFIYASVAVL GYLMYGSDVE SQITLNLPTD KLSSKVAIWT
301: TLVNPIAKFA LMVTPIIDAM RSRFSRVLPN KRASGFLLST ILVTSNVIVA LLLPFFGDLM SLVGAFLSAS ASVILPCLCY LKISGKYQRL GFETLVLIGI
401: TLTGIVVVIT GTYQAVKDIF GRF
101: YKAFGNTGRV IVSIFMNLEL YLVATSFLIL EGDNLNKLFS NVGLNFMGLE FQGKQMFIIM VALIILPSVW LDNMRILSYV SASGVFASGV ILASIFSVGA
201: FEGVGFKNND SEVFRLNGVA TSVSLYAFCY CAHPVFPTLY TSMKNKRQFS NVMIICFTIC TFIYASVAVL GYLMYGSDVE SQITLNLPTD KLSSKVAIWT
301: TLVNPIAKFA LMVTPIIDAM RSRFSRVLPN KRASGFLLST ILVTSNVIVA LLLPFFGDLM SLVGAFLSAS ASVILPCLCY LKISGKYQRL GFETLVLIGI
401: TLTGIVVVIT GTYQAVKDIF GRF
Arabidopsis Description
AVT1JAmino acid transporter AVT1J [Source:UniProtKB/Swiss-Prot;Acc:Q9LXF8]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.